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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTATGTTCAGTACAACGTTTATGGACAACTCTTTGAAGTTTCCAGAAAGTATGTCCCTCCTATTCGTCCCATTGGTAGAGGCGCTTGCGGTATTGTCTGgtaagttcttttgattctttgtctgataaattatgaaagcgttccttctattgaatgttcacaggctcttgattcttgaatttcag

Basic information

species Arabidopsis thaliana
transcript AT2G46070.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G46070.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA07G07270.1 (Glycine max), 5'ss of exon 1
GCTATGTTCAGTACAACGTTTATGGACAACTCTTTGAAGTTTCCAGAAAGTATGTCCCTCCTATTCGTCCCATTGGTAGAGGCGCTTGCGGTATTGTCTGgtaagttcttttgattctttgtctgataaattatgaaagcgttccttctattgaatgttcacaggctc-ttgattcttgaatttcag---------------
||||||||||||||||  | |||||  | |||||||||||||||||||||||||||||||||||||| ||  | |||||||||||||  |||||||| ||||||||      || ||||| ||    || |||| |     |   || | ||   ||||    |  || || ||   |  ||||                  
GCTATGTTCAGTACAATATCTATGGCAATCTCTTTGAAGTTTCCAGAAAGTATGTCCCTCCTATTCGCCCTGTGGGTAGAGGCGCTTATGGTATTGTTTGgtaagtcaaa--gactctttttcgctgaatttattagcatttgtttttttttttctgttgttggtttcatttatatatttattttgtaaaggagtgtccttg

upper sequence: AT2G46070.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA16G03670.1 (Glycine max), 5'ss of exon 1
GCTATGTTCAGTACAACGTTTATGGACAACTCTTTGAAGTTTCCAGAAAGTATGTCCCTCCTATTCGTCCCATTGGTAGAGGCGCTTGCGGTATTGTCTGgtaagttcttttgattctttgtctgataaattatgaaagcgttccttctattgaatgttcacaggctcttgattcttgaatttcag----------------
||||||||||||||||  | |||||  | ||||| |||||||||||||||||||||||||||||||| ||  | |||||||| ||||  |||||||| |||||||  |      |  ||| | || | |||| |   ||| ||  || |  |   ||||       | |||      |   |                    
GCTATGTTCAGTACAATATCTATGGCAATCTCTTCGAAGTTTCCAGAAAGTATGTCCCTCCTATTCGCCCTGTCGGTAGAGGTGCTTATGGTATTGTTTGgtaagcccaga-actcttttatttgctgaatt-tattagcatttgttgttgttgttgttgttttttttttgggcaaaggggtatccttgttttgagctgact

upper sequence: AT2G46070.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA09G39190.1 (Glycine max), 5'ss of exon 1
GCTATGTTCAGTACAACGTTTATGGACAACTCTTTGAAGTTTCCAGAAAGTATGTCCCTCCTATTCGTCCCATTGGTAGAGGCGCTTGCGGTATTGTCTGgtaag---------ttcttttgattctttgtctgataaatta--tgaaagcgttccttctattgaatgttcacaggctcttgattcttgaatttcag----
||||||||||||| ||  | |||||| | |||||||| || || || |||||||||||||||||||| ||  | || ||||| || |  || ||||| |||||||         || |  ||    |  || |  |   ||   ||||  | ||  || |||    || |    |    ||| |    |  |||  |    
GCTATGTTCAGTATAATATCTATGGAAACCTCTTTGAGGTCTCTAGGAAGTATGTCCCTCCTATTCGCCCTGTGGGAAGAGGAGCATATGGAATTGTTTGgtaaggaagaaattttttcgtggggttcagttttttgttttggctgaattcatttgttttatgtgttgctttttgttatttg-tgagggtgttttggggat

upper sequence: AT2G46070.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA18G47140.1 (Glycine max), 5'ss of exon 1
GCTATGTTCAGTACAACGTTTATGGACAACTCTTTGAAGTTTCCAGAAAGTATGTCCCTCCTATTCGTCCCATTGGTAGAGGCGCTTGCGGTATTGTCTGgtaag--------ttcttttgattctttgtctgataaatta--tgaaagcgttccttctattgaatgttcacag-gctcttgat----tcttgaatttcag
 |||||||||||||||  | |||||| | |||||||| || || || |||||||| ||||||||||| ||  | || ||||| || |  |||||||| |||||||        || |||      ||   ||  |   ||   ||||  | ||  || | |    ||||      | |  |||     | ||||   | | 
-CTATGTTCAGTACAATATCTATGGAAACCTCTTTGAGGTCTCTAGGAAGTATGTTCCTCCTATTCGCCCTGTGGGAAGAGGAGCATATGGTATTGTTTGGtaaggaagaaacttttttgtggggttgagcttttgttttggctgaattcatttgttttctgtgttgtttttgttgtttgtgagggtgttttgaggataaa

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19877463|gb|AU238294.1|AU238294
EST:     TATGTCCCTCCTATTCGTCCCATTGGTAGAGGCGCTTGCGGTATTGTCTG                         TGCTGCGGTGAACTCAGTGACTGGAGAGAAAGTGGCTATTAAGAAGATCGG
genomic: TATGTCCCTCCTATTCGTCCCATTGGTAGAGGCGCTTGCGGTATTGTCTGgtaagttctt ... tgaatttcagTGCTGCGGTGAACTCAGTGACTGGAGAGAAAGTGGCTATTAAGAAGATCGG