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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTTACTGGTTTAACCGTGATCGTTTCGTTCTCTCTGCTGGACATGGATGCATGTTGCAATACGCTCTGCTTCACCTTGCTGGCTACGACAGCGTTAGGgtttgtgttctcttactctgcttattaagtttgtatccttttagtttacattattgagattacatagtaaatacacagattgttccgtttccctgctcatttggtgatttttggagtcttgagatttagaattgtagaaccaacttaagatttgctgaagcagtgttgaagttttttattag

Basic information

species Arabidopsis thaliana
transcript AT2G45290.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G45290.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: LOC_Os04g19740.1 (Oryza sativa), 5'ss of exon 1
TCCTTACTGGTTTAACCGTGATCGTTTCGTTCTCTCTGCTGGACATGGATGCATGTTGCAATACGCTCTGCTTCACCTTGCTGGCTACGACAGCGTTAGGgtttgtgttctcttactctgcttattaagtttgtatccttttagtttacattattgagattacatagtaaat-acacagattgttccgtttccctgctcatttggtgatttttggagtcttgagatttagaattgtagaaccaacttaagatttgctgaagcagtgttgaagttttttattag
 || ||||||||  |||| || || ||| | ||||| || || |||||||||||| | || ||||| ||||||||||| || || ||||||||||| | |||  |  | |||||    ||  | ||  ||  |  |       | ||   |  | ||  ||    || |  |   | |      ||  || |||||   ||                                                                                  
CCCCTACTGGTTCGACCGCGACCGCTTCATCCTCTCCGCCGGCCATGGATGCATGCTCCAGTACGCACTGCTTCACCTCGCCGGATACGACAGCGTCACGgtgagc-tcctcttttcttgaattttttgtggggctttaggagggttttttggtcgaattttaggagcagtttgtaaatggaaatcgattgccctggaaat----------------------------------------------------------------------------------

upper sequence: AT2G45290.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA10G43990.1 (Glycine max), 5'ss of exon 1
TCCTTACTGGTTTAACCGTGATCGTTTCGTTCTCTCTGCTGGACATGGATGCATGTTGCAATACGCTCTGCTTCACCTTGCTGGCTACGACAGCGTTAGGgtttgtgttctcttactctgcttattaagtttgtatccttttagtttacattattgagattacatagtaaatacacagattgttccgtttccctgctcatttggtgatttttggagtcttgagatttagaattgtagaaccaacttaagatttgctgaagcagtgttgaagttttttattag
 ||    ||||| |||||||| |||||||||||||||||||||||||| |||||| | ||||| ||||| ||||||||||||||||| ||||  |||  |||  || ||  |||  | |  | |||            |||    || || ||||| || |   | | || |       |  |  ||||    |     ||  |||  || |                                                                      
CCCCGCTTGGTTCAACCGTGACCGTTTCGTTCTCTCTGCTGGACATGGCTGCATGCTCCAATATGCTCTCCTTCACCTTGCTGGCTATGACACTGTTCAGgtcagtttttacttctttttttcatt------------tttctactttcactattgggagtgactcggaactgtgatcctcatgtcgttagaatttaatttaagtgcattgt----------------------------------------------------------------------

upper sequence: AT2G45290.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA20G38720.1 (Glycine max), 5'ss of exon 1
TCCTTACTGGTTTAACCGTGATCGTTTCGTTCTCTCTGCTGGACATGGATGCATGTTGCAATACGCTCTGCTTCACCTTGCTGGCTACGACAGCGTTAGGgtttgtgttctcttactctgcttattaagtttgtatccttttagtttacattattgagattacatagtaaatacacagattgttccgtttccctgctcatttggtgatttttggagtcttgagatttagaattgtagaaccaacttaagatttgctgaagcagtgttgaagttttttattag
|||    ||||| |||||||| |||||| ||||||||||||||||||| |||||| | ||||| ||||| ||||||||||| ||||| ||||| |||  |||  |  ||  |||   || ||| ||   ||| | | |||||| | |     ||| |  ||     || | |   ||||   ||| | | | |  | | || |   ||||                                                                        
TCCCACTTGGTTCAACCGTGACCGTTTCATTCTCTCTGCTGGACATGGCTGCATGCTCCAATATGCTCTCCTTCACCTTGCAGGCTATGACAGTGTTCTGgtcagcttttactt---ctccttgtttcttttttgtacttttactat-tgggattcattttgatctgtgact---caga--attctgatcctcatcccgttaga--attta-----------------------------------------------------------------------

upper sequence: AT2G45290.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv15s0048g00370.t01 (Vitis vinifera), 5'ss of exon 1
TCCTTACTGGTTTAACCGTGATCGTTTCGTTCTCTCTGCTGGACATGGATGCATGTTGCAATACGCTCTGCTTCACCTTGCTGGCTACGACAGCGTTAGGgtttgtg--ttctcttactctgcttattaagtttgtatccttttagtttacattattgagattacatagtaaatacacagattgttc-cgtttccctgctcatttggtgatttttggagtcttgagatttagaattgtagaaccaacttaagatttgctgaagcagtgttgaagttttttattag
 || |||||||| || |||||||| || ||||||||||| ||||||||||||||| | || |||||||||||||||||||||||||||||||| || ||||||||||  ||  ||||   | |||    || |||     | |  |||   ||  ||  | |    | |  ||   ||  ||       |  || ||| |                                                                                     
CCCCTACTGGTTCAATCGTGATCGCTTTGTTCTCTCTGCCGGACATGGATGCATGCTTCAGTACGCTCTGCTTCACCTTGCTGGCTACGACAGTGTCAGGgtttgtgcatttccttaactttctttgggagcttgctctgtatgtgttcggatctttatg-tggttttgccaaagtacgaatcaaaaatggatctctgttt------------------------------------------------------------------------------------

upper sequence: AT2G45290.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv16s0022g01440.t01 (Vitis vinifera), 5'ss of exon 1
TCCTTACTGGTTTAACCGTGATCGTTTCGTTCTCTCTGCTGGACATGGATGCATGTTGCAATACGCTCTGCTTCACCTTGCTGGCTACGACAGCGTTAGGgtttgtgttctcttactctgcttattaagtttgtatccttttagtttacattattgagattacatagtaaatacacagattgttccgtttccctgctcatttggtgatttttggagtcttgagatttagaattgtagaaccaacttaagatttgctgaagcagtgttgaagttttttattag
 || |||||||| || |||||||| ||||||||||| ||||| || || || |||||||| || ||| | ||||| ||||||||||| ||||| |||| |||   | || | || | | |   |||   |||  ||   | |  ||||   | || |  ||  ||  |   || |  |  | | ||        ||  |                                                                                   
CCCCTACTGGTTCAATCGTGATCGATTCGTTCTCTCCGCTGGCCACGGCTGTATGTTGCAGTATGCTTTACTTCATCTTGCTGGCTATGACAGTGTTAAGgtgaattttttatttc-cagtgcattttttttaaatgtatatt-tttaatctttttattttttatttttggtatatgggctttgccagagtttagcaaaaca--------------------------------------------------------------------------------

upper sequence: AT2G45290.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: EFJ07676 (Selaginella moellendorffii), 5'ss of exon 1
TCCTTACTGGTTTAACCGTGATCGTTTCGTTCTCTCTGCTGGACATGGATGCATGTTGCAATACGCTCTGCTTCACCTTGCTGGCTACGACAGCGTTAGGgtttgtgttctcttactctgcttattaagtttgtatccttttagtttacattattgagattacatagtaaatacacagattgttccgtttccctgctcatttggtgatttttggagtcttgagatttagaattgtagaaccaacttaagatttgctgaagcagtgttgaagttttttattag
 ||||||||||| ||| | ||||| ||||||||||| ||||| || ||||||||| | |||||||| || || || ||||||||||||||||| || | |||  |   ||  ||  |||        |||||  | | |||   |  |  || ||    || ||   |  ||     | ||||| |                                                                                                
CCCTTACTGGTTCAACAGGGATCGCTTCGTTCTCTCGGCTGGTCACGGATGCATGCTCCAATACGCCCTTCTCCATCTTGCTGGCTACGACAGTGTCAAGgtaggctctccattgatct--------agtttcgagcttttctatcaaagttcttc--ctttcaacatggatttcttgcttgtttccag---------------------------------------------------------------------------------------------

upper sequence: AT2G45290.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: EFJ07729 (Selaginella moellendorffii), 5'ss of exon 1
TCCTTACTGGTTTAACCGTGATCGTTTCGTTCTCTCTGCTGGACATGGATGCATGTTGCAATACGCTCTGCTTCACCTTGCTGGCTACGACAGCGTTAGGgtttgtgttctcttactctgcttattaagtttgtatccttttagtttacattattgagattacatagtaaatacacagattgttccgtttccctgctcatttggtgatttttggagtcttgagatttagaattgtagaaccaacttaagatttgctgaagcagtgttgaagttttttattag
 ||||||||||| ||| | ||||| ||||||||||| ||||| || ||||||||| | |||||||| || || || ||||||||||||||||| || | |||  |   ||  ||  |||        |||||  | | |||   |  |  || ||    || ||   |  ||     | ||||| |                                                                                                
CCCTTACTGGTTCAACAGGGATCGCTTCGTTCTCTCGGCTGGTCACGGATGCATGCTCCAATACGCCCTTCTCCATCTTGCTGGCTACGACAGTGTCAAGgtaggctctccattgatct--------agtttcgagcttttctatcaaagttcttc--ctttcaacatggatttcttgtttgtttccag---------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116467576|gb|EG510168.1|EG510168
EST:     GCATGTTGCAATACGCTCTGCTTCACCTTGCTGGCTACGACAGCGTTAGG                         GAGGAAGATTTGAAGAGCTTCCGTCAATGGGGAAGTAAGACTCCAGGACAT
genomic: GCATGTTGCAATACGCTCTGCTTCACCTTGCTGGCTACGACAGCGTTAGGgtttgtgttc ... tttttattagGAGGAAGATTTGAAGAGCTTCCGTCAATGGGGAAGTAAGACTCCAGGACAT
EST: gi|116464596|gb|EG507188.1|EG507188
EST:     GCATGTTGCAATACGCTCTGCTTCACCTTGCTGGCTACGACAGCGTTAGG                         GAGGAAGATTTGAAGAGCTTCCGTCAATGGGGAAGTAAGACTCCAGGACAT
genomic: GCATGTTGCAATACGCTCTGCTTCACCTTGCTGGCTACGACAGCGTTAGGgtttgtgttc ... tttttattagGAGGAAGATTTGAAGAGCTTCCGTCAATGGGGAAGTAAGACTCCAGGACAT
EST: gi|116480249|gb|EG522841.1|EG522841
EST:     GCATGTTGCAATACGCTCTGCTTCACCTTGCTGGCTACGACAGCGTTAGG                         GAGGAAGATTTGAAGAACTTCCGTCAATGGGGGAAGTAAGACTCCAGGACA
genomic: GCATGTTGCAATACGCTCTGCTTCACCTTGCTGGCTACGACAGCGTTAGGgtttgtgttc ... tttttattagGAGGAAGATTTGAAGAGCTTCCGTCAATGGGG-AAGTAAGACTCCAGGACA