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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtcaaaaactcagaatattggaatgttttttagtcataaatcatcttcttacaagttacttctgtttctagGTTTTTCCTGGCTCGTCTTCCACAAAACATGCCCCATACCATCCTTCAGATCAACCTCCACGAGGACAAGTCATGAACAGATTACCATCTGTTCCTGCCA

Basic information

species Arabidopsis thaliana
transcript AT2G44440.1
intron # 4
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attggaatgttttttagtcataaatcatcttcttacaagttacttctgtttctagGTTTTTCCTGGCTCGTCTTCCACAAAACATGCCCCATACCATCCTTCAGATCAACCTCCACGAGGACAAGTCATGAACAGATTACCATCTGTTCCTGCCA
                             ttcttac  putative branch site (score: 2)
                                       ttacttctgtttct  putative PPT
         ttttttagtcataaat  TA-rich tract