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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttttgttataatacatcttcatgttttttcttccttctgatagttataatatctggtaatttttcttagtggaatctttacattttgtttatgtaattaacattgttgttcatcatgtatagtttgtttttgctcttgttactgatgaccacgttaaaacaaatttatgcaatatacagGTGAGACTAAATGACGATGAGTTTGTGACCGGGTTGAGTGCAATATATCTTTGTAAAGGGATCACGAATTTGAATATTCACACTAATCAGGGGAAACACG

Basic information

species Arabidopsis thaliana
transcript AT2G43740.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116384017|gb|EG426609.1|EG426609
EST:     ATGCCCAAAAACAAAAGTATGGTTCGTACAACGGTCGATTCCACGTAATG                         GTGAGACTAAATGACGATGAGTTTGTGACCGGGTTGAGTGCAATATATCTT
genomic: ATGCCCAAAAACAAAAGTATGGTTCGTACAACGGTCGATTCCACGTAATGgtaagttttg ... caatatacagGTGAGACTAAATGACGATGAGTTTGTGACCGGGTTGAGTGCAATATATCTT
EST: gi|116384010|gb|EG426602.1|EG426602
EST:     ATGCCCAAAAACAAAAGTATGGTTCGTACAACGGTCGATTCCACGTAATG                         GTGAGACTAAATGACGATGAGTTTGTGACCGGGTTGAGTGCAATATATCTT
genomic: ATGCCCAAAAACAAAAGTATGGTTCGTACAACGGTCGATTCCACGTAATGgtaagttttg ... caatatacagGTGAGACTAAATGACGATGAGTTTGTGACCGGGTTGAGTGCAATATATCTT
EST: gi|116384011|gb|EG426603.1|EG426603
EST:     ATGCCCAAAAACAAAAGTATGGTTCGTACAACGGTCGATTCCACGTAATG                         GTGAGACTAAATGACGATGAGTTTGTGACCGGGTTGAGTGCAATATATCTT
genomic: ATGCCCAAAAACAAAAGTATGGTTCGTACAACGGTCGATTCCACGTAATGgtaagttttg ... caatatacagGTGAGACTAAATGACGATGAGTTTGTGACCGGGTTGAGTGCAATATATCTT
EST: gi|116427680|gb|EG470272.1|EG470272
EST:     ATGCCCAAAAACAAAAGTATGGTTCGTACAACGGTCGATTCCACGTAATG                         GTGAGACTAAATGACGATGAGTTTGTGACCGGGTTGAGTGCAATATATCTT
genomic: ATGCCCAAAAACAAAAGTATGGTTCGTACAACGGTCGATTCCACGTAATGgtaagttttg ... caatatacagGTGAGACTAAATGACGATGAGTTTGTGACCGGGTTGAGTGCAATATATCTT
EST: gi|116383992|gb|EG426584.1|EG426584
EST:     ATGCCCAAAAACAAAAGTATGGTTCGTACAACGGTCGATTCCACGTAATG                         GTGAGACTAAATGACGATGAGTTTGTGACCGGGTTGAGTGCAATATATCTT
genomic: ATGCCCAAAAACAAAAGTATGGTTCGTACAACGGTCGATTCCACGTAATGgtaagttttg ... caatatacagGTGAGACTAAATGACGATGAGTTTGTGACCGGGTTGAGTGCAATATATCTT
EST: gi|116384019|gb|EG426611.1|EG426611
EST:     ATGCCCAAAAACAAAAGTATGGTTCGTACAACGGTCGATTCCACGTAATG                         GTGAGACTAAATGACGATGAGTTTGTGACCGGGTTGAGTGCAATATATCTT
genomic: ATGCCCAAAAACAAAAGTATGGTTCGTACAACGGTCGATTCCACGTAATGgtaagttttg ... caatatacagGTGAGACTAAATGACGATGAGTTTGTGACCGGGTTGAGTGCAATATATCTT
EST: gi|116384024|gb|EG426616.1|EG426616
EST:     ATGCCCAAAAACAAAAGTATGGTTCGTACAACGGTCGATTCCACGTAATG                         GTGAGACTAAATGACGATGAGTTTGTGACCGGGTTGAGTGCAATATATCTT
genomic: ATGCCCAAAAACAAAAGTATGGTTCGTACAACGGTCGATTCCACGTAATGgtaagttttg ... caatatacagGTGAGACTAAATGACGATGAGTTTGTGACCGGGTTGAGTGCAATATATCTT
EST: gi|116384012|gb|EG426604.1|EG426604
EST:     ATGCCCAAAAACAAAAGTATGGTTCGTACAACGGTCGATTCCACGTAATG                         GTGAGACTAAATGACGATGAGTTTGTGACCGGGTTGAGTGCAATATATCTT
genomic: ATGCCCAAAAACAAAAGTATGGTTCGTACAACGGTCGATTCCACGTAATGgtaagttttg ... caatatacagGTGAGACTAAATGACGATGAGTTTGTGACCGGGTTGAGTGCAATATATCTT
EST: gi|116383997|gb|EG426589.1|EG426589
EST:     ATGCCCAAAAACAAAAGTATGGTTCGTACAACGGTCGATTCCACGTAATG                         GTGAGACTAAATGACGATGAGTTTGTGACCGGGTTGAGTGCAATATATCTT
genomic: ATGCCCAAAAACAAAAGTATGGTTCGTACAACGGTCGATTCCACGTAATGgtaagttttg ... caatatacagGTGAGACTAAATGACGATGAGTTTGTGACCGGGTTGAGTGCAATATATCTT
EST: gi|116384025|gb|EG426617.1|EG426617
EST:     ATGCCCAAAAACAAAAGTATGGTTCGTACAACGGTCGATTCCACGTAATG                         GTGAGACTAAATGACGATGAGTTTGTGACCGGGTTGAGTGCAATATATCTT
genomic: ATGCCCAAAAACAAAAGTATGGTTCGTACAACGGTCGATTCCACGTAATGgtaagttttg ... caatatacagGTGAGACTAAATGACGATGAGTTTGTGACCGGGTTGAGTGCAATATATCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttttgctcttgttactgatgaccacgttaaaacaaatttatgcaatatacagGTGAGACTAAATGACGATGAGTTTGTGACCGGGTTGAGTGCAATATATCTTTGTAAAGGGATCACGAATTTGAATATTCACACTAATCAGGGGAAACACG
               tactgat  putative branch site (score: 2)
                             ttaaaacaaatttatg  TA-rich tract