Sequence
atgc intronic sequence ATGC exonic sequencegtaagttttgttataatacatcttcatgttttttcttccttctgatagttataatatctggtaatttttcttagtggaatctttacattttgtttatgtaattaacattgttgttcatcatgtatagTTTGTTTTTGCTCTTGTTACTGATGACCACGTTAAAACAAATTTATGCAATATACAGGTGAGACTAAATGACGATGAGTTTGTGACCGGGTTGAGTGCAA
Basic information
species | Arabidopsis thaliana |
transcript | AT2G43740.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116427679|gb|EG470271.1|EG470271EST: ATGCCCAAAAACAAAAGTATGGTTCGTACAACGGTCGATTCCACGTAATG TTTGTTTTTGCTCTTGTTACTGATGACCACGTTAAAACAAATTTATGCAAT
genomic: ATGCCCAAAAACAAAAGTATGGTTCGTACAACGGTCGATTCCACGTAATGgtaagttttg ... tcatgtatagTTTGTTTTTGCTCTTGTTACTGATGACCACGTTAAAACAAATTTATGCAAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agtggaatctttacattttgtttatgtaattaacattgttgttcatcatgtatagTTTGTTTTTGCTCTTGTTACTGATGACCACGTTAAAACAAATTTATGCAATATACAGGTGAGACTAAATGACGATGAGTTTGTGACCGGGTTGAGTGCAA
aattaac putative branch site (score: 2)
aatctttacattttgt TA-rich tract