1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GTCTAAGGTGCAGAAGAGGAAACTGAGCTCAGTTGGAGAATCCATTGAATACAGATGCCTTATTCGAGCAACCGATGGAAAGAAAACTGTTTCTACTTCGgtatgttctacacattatctcaagattatgatctcgaaccatgtatgtttccaaacgtaggaactattcattagtaaactaaacagcacatcgattactc...
species | Arabidopsis thaliana |
transcript | AT2G43640.3 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ACAGATGCCTTATTCGAGCAACCGATGGAAAGAAAACTGTTTCTACTTCG GTTGGTGCTAAGGATCACCAGAGATTTCAAGCATEST: gi|124799624|gb|EH889303.1|EH889303
genomic: ACAGATGCCTTATTCGAGCAACCGATGGAAAGAAAACTGTTTCTACTTCGgtatgttcta ... tgtttgtaagGTTGGTGCTAAGGATCACCAGAGATTTCAAGCAT
EST: CAGATGCCTTATTCGAGCAACCGATTGGAAAGAAAACTGTTTCTACTTCG GTTGGTGCTAAGGATCACCAGAGATTTCAAGCATCATATGCCACCATTEST: gi|164123491|gb|ES114790.1|ES114790
genomic: CAGATGCCTTATTCGAGCAACCGA-TGGAAAGAAAACTGTTTCTACTTCGgtatgttcta ... tgtttgtaagGTTGGTGCTAAGGATCACCAGAGATTTCAAGCATCATATGCCACCATT
EST: CAGATGCCTTATTCGAGCAACCGATAGGAAAGAAAACTGTTTCTACTTCG GTTGGTGCTAAGGAT
genomic: CAGATGCCTTATTCGAGCAACCGAT-GGAAAGAAAACTGTTTCTACTTCGgtatgttcta ... tgtttgtaagGTTGGTGCTAAGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCTAAGGTGCAGAAGAGGAAACTGAGCTCAGTTGGAGAATCCATTGAATACAGATGCCTTATTCGAGCAACCGATGGAAAGAAAACTGTTTCTACTTCGgtatgttctacacattatctcaagattatgatctcgaaccatgtatgtttccaaacgtaggaactattcattagtaaactaaacagcacatcgattactc
- - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aactaaac