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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAATGTCCGAATACATCTCCAAAGTAAGCAATAAGCAAAGGAAAATGAAGTTTGTTTCCGTCTTCCTCGTTCTGTTTATCTTCTTCCTCGTCGTTCTTGgtaagtactgaatctatatacagttactgcattatttacgatattacccactcttacaacctcataacaatatgcag

Basic information

species Arabidopsis thaliana
transcript AT2G43550.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86024499|gb|DR320252.1|DR320252
EST:     GTTTGTTTCCGTCTTCCTCGTTCTGTTTATCTTCTTCCTCGTCGTTCTTG                         AGGCCCCGGAGAAGRNGAGAAGCCAAAGACGACAAGTTCATATGTGTGGTT
genomic: GTTTGTTTCCGTCTTCCTCGTTCTGTTTATCTTCTTCCTCGTCGTTCTTGgtaagtactg ... caatatgcagAGGCCCCGGAGAAG-ATAGAAGCCAAAGACGACAAGTTCATATGTGTGGTT
EST: gi|86024503|gb|DR320256.1|DR320256
EST:     GTTTGTTTCCGTCTTCCTCGTTCTGTTTATCTTCTTCCTCGTCGTTCTTG                         AGGCCCCGGAGAAGATAGAAGCCAAAGACGACAAGTTCATATGTGTGGTTG
genomic: GTTTGTTTCCGTCTTCCTCGTTCTGTTTATCTTCTTCCTCGTCGTTCTTGgtaagtactg ... caatatgcagAGGCCCCGGAGAAGATAGAAGCCAAAGACGACAAGTTCATATGTGTGGTTG
EST: gi|86074222|gb|DR369979.1|DR369979
EST:     GTTTGTTTCCGTCTTCCTCGTTCTGTTTATCTTCTTCCTCGTCGTTCTTG                         AGGCCCCGGAGAAGATAGAAGCCAAAGACGACAAGTTCATATGTGTGGTTG
genomic: GTTTGTTTCCGTCTTCCTCGTTCTGTTTATCTTCTTCCTCGTCGTTCTTGgtaagtactg ... caatatgcagAGGCCCCGGAGAAGATAGAAGCCAAAGACGACAAGTTCATATGTGTGGTTG
EST: gi|47828933|gb|CK118617.1|CK118617
EST:     GTTTGTTTCCGTCTTCCTCGTTCTGTTTATCTTCTTCCTCGTCGTTCTTG                         AGGCCCCGGAGAAGATAGAAGCCAAAGACGACAAGTTCATATGTGTGGTTG
genomic: GTTTGTTTCCGTCTTCCTCGTTCTGTTTATCTTCTTCCTCGTCGTTCTTGgtaagtactg ... caatatgcagAGGCCCCGGAGAAGATAGAAGCCAAAGACGACAAGTTCATATGTGTGGTTG
EST: gi|19878788|gb|AU239619.1|AU239619
EST:     GTTAGTTTCCGTCTTCCTCGTTCTGTTTATCTTCTTCCTCGTCGTTCTTG                         AGGCCCCGGAGAAGATAGAAGCCAAAGACGACAAGTTCATATGTGTGGTTG
genomic: GTTTGTTTCCGTCTTCCTCGTTCTGTTTATCTTCTTCCTCGTCGTTCTTGgtaagtactg ... caatatgcagAGGCCCCGGAGAAGATAGAAGCCAAAGACGACAAGTTCATATGTGTGGTTG
EST: gi|86024500|gb|DR320253.1|DR320253
EST:     GTTTGTTTCCGTCTTCCTCGTTCTGTTTATCTTCTTCCTCGTCGTTCTTG                         AGGCCCCGGAGAAGATAGAAGCCAAAGACGACAAGTTCATA--TGTGGTTG
genomic: GTTTGTTTCCGTCTTCCTCGTTCTGTTTATCTTCTTCCTCGTCGTTCTTGgtaagtactg ... caatatgcagAGGCCCCGGAGAAGATAGAAGCCAAAGACGACAAGTTCATATGTGTGGTTG
EST: gi|86024494|gb|DR320247.1|DR320247
EST:     GTTTGTTTCCGTCTTCCTCGTTCTGTTTATCTTCTTCCTCGTCGTTCTTG                         AGGCCCCGGAGAAGATAGAAGCCAAAGACGACAAGTTCATATGTGTGGTTG
genomic: GTTTGTTTCCGTCTTCCTCGTTCTGTTTATCTTCTTCCTCGTCGTTCTTGgtaagtactg ... caatatgcagAGGCCCCGGAGAAGATAGAAGCCAAAGACGACAAGTTCATATGTGTGGTTG
EST: gi|86024504|gb|DR320257.1|DR320257
EST:     GTTTGTTTCCGTCTTCCTCGTTCTGTTTATCTTCTTCCTCGTCGTTCTTG                         AGGCCCCGGAGAAGATAGAAGCCAAAGACGACAAGTTCATATGTGTGGTTG
genomic: GTTTGTTTCCGTCTTCCTCGTTCTGTTTATCTTCTTCCTCGTCGTTCTTGgtaagtactg ... caatatgcagAGGCCCCGGAGAAGATAGAAGCCAAAGACGACAAGTTCATATGTGTGGTTG
EST: gi|124824429|gb|EH909295.1|EH909295
EST:     GTTTGTTTCCGTCTTCCTCGTTCTGTTTATCTTCTTCCTCGTCGTTCTTG                         AGGCCCCGGAG
genomic: GTTTGTTTCCGTCTTCCTCGTTCTGTTTATCTTCTTCCTCGTCGTTCTTGgtaagtactg ... caatatgcagAGGCCCCGGAG
EST: gi|86024498|gb|DR320251.1|DR320251
EST:     KTTTGTTTCCGTCTTCCTCGTTCTGTTTATCTTCTTCCTCGTCGTTCTTG                         AGGCCCCGGAGAAGATAGAAGCCAAAGACGACAAGTTCATATGTGTGGTTG
genomic: GTTTGTTTCCGTCTTCCTCGTTCTGTTTATCTTCTTCCTCGTCGTTCTTGgtaagtactg ... caatatgcagAGGCCCCGGAGAAGATAGAAGCCAAAGACGACAAGTTCATATGTGTGGTTG
EST: gi|164133650|gb|EL981464.1|EL981464
EST:     TCTTCTTCCTCGTCGTTCTTG                         AGGCCCCGGAGAAGATAGAAGCCAAAGACGACAAGTTCATATGTGTGGTTG
genomic: TCTTCTTCCTCGTCGTTCTTGgtaagtactg ... caatatgcagAGGCCCCGGAGAAGATAGAAGCCAAAGACGACAAGTTCATATGTGTGGTTG
EST: gi|47830704|gb|CK120388.1|CK120388
EST:     GTTTGTTTCCGTCTTCCTCGTTCTGTTTATCTTCTTCCTCGTCGTTCTTG                         AGGCCCCGGAGAAGATAGAAGCCAAAGACGACAAGTTCATATGTGTGGTTG
genomic: GTTTGTTTCCGTCTTCCTCGTTCTGTTTATCTTCTTCCTCGTCGTTCTTGgtaagtactg ... caatatgcagAGGCCCCGGAGAAGATAGAAGCCAAAGACGACAAGTTCATATGTGTGGTTG
EST: gi|125325218|gb|EL339298.1|EL339298
EST:     GTTTGTTTCCGTCTTCCTCGTTCTGTTTATCTTCTTCCTCGTCGTTCTTG                         AGGCCCCGGAG
genomic: GTTTGTTTCCGTCTTCCTCGTTCTGTTTATCTTCTTCCTCGTCGTTCTTGgtaagtactg ... caatatgcagAGGCCCCGGAG
EST: gi|86024497|gb|DR320250.1|DR320250
EST:     GTTTGTTTCCGTCTTCCTCGTTCTGTTTATCTTCTTCCTCGTCGTTCTTG                         AGGCCCCGGAGAAGATAGAAGCCAAAGACGACAAGTTCATATGTGTGGTTG
genomic: GTTTGTTTCCGTCTTCCTCGTTCTGTTTATCTTCTTCCTCGTCGTTCTTGgtaagtactg ... caatatgcagAGGCCCCGGAGAAGATAGAAGCCAAAGACGACAAGTTCATATGTGTGGTTG
EST: gi|125007255|gb|EL079524.1|EL079524
EST:     GTTTGTTTCCGTCTTCCTCGTTCTGTTTATCTTCTTCCTCGTCGTTCTTG                         AGGCCCCGGAG
genomic: GTTTGTTTCCGTCTTCCTCGTTCTGTTTATCTTCTTCCTCGTCGTTCTTGgtaagtactg ... caatatgcagAGGCCCCGGAG
EST: gi|86076754|gb|DR372511.1|DR372511
EST:     GTTTGTTTCCGTCTTCCTCGTTCTGTTTATCTTCTTCCTCGTCGTTCTTG                         AGGCCCCGGAGAAGATAGAAGCCAAAGACGACAAGTTCATA--TGTGGTTG
genomic: GTTTGTTTCCGTCTTCCTCGTTCTGTTTATCTTCTTCCTCGTCGTTCTTGgtaagtactg ... caatatgcagAGGCCCCGGAGAAGATAGAAGCCAAAGACGACAAGTTCATATGTGTGGTTG
EST: gi|124952591|gb|EL027849.1|EL027849
EST:     GTTTGTTTCCGTCTTCCTCGTTCTGTTTATCTTCTTCCTCGTCGTTCTTG                         AGGCCCCGGAGAAGATAGAAGCCAAAG
genomic: GTTTGTTTCCGTCTTCCTCGTTCTGTTTATCTTCTTCCTCGTCGTTCTTGgtaagtactg ... caatatgcagAGGCCCCGGAGAAGATAGAAGCCAAAG
EST: gi|86024502|gb|DR320255.1|DR320255
EST:     GTTTGTTTCCGTCTTCCTCGTTCTGTTTATCTTCTTCCTCGTCGTTCTTG                         AGGCCCCGGAGAAGATAGAAGCCAAAGACGACAAGTTCATATGTGTGGTTG
genomic: GTTTGTTTCCGTCTTCCTCGTTCTGTTTATCTTCTTCCTCGTCGTTCTTGgtaagtactg ... caatatgcagAGGCCCCGGAGAAGATAGAAGCCAAAGACGACAAGTTCATATGTGTGGTTG
EST: gi|86024501|gb|DR320254.1|DR320254
EST:     GTTTGTTTCCGTCTTCCTCGTTCTGTTTATCTTCTTCCTCGTCGTTCTTG                         AGGCCCCGGAGAAGATAGAAGCCAAAGACGACAAGTTCATATGTGTGGTTG
genomic: GTTTGTTTCCGTCTTCCTCGTTCTGTTTATCTTCTTCCTCGTCGTTCTTGgtaagtactg ... caatatgcagAGGCCCCGGAGAAGATAGAAGCCAAAGACGACAAGTTCATATGTGTGGTTG
EST: gi|164011281|gb|ES210070.1|ES210070
EST:     GTTTGTTTCCGTCTTCCTCGTTCTGTTTATCTTCTTCCTCGTCGTTCTTG                         AGGCCCCGGAGAAGATAGAAGCCAAAGACGACAAG
genomic: GTTTGTTTCCGTCTTCCTCGTTCTGTTTATCTTCTTCCTCGTCGTTCTTGgtaagtactg ... caatatgcagAGGCCCCGGAGAAGATAGAAGCCAAAGACGACAAG
EST: gi|86024505|gb|DR320258.1|DR320258
EST:     GTTTGTTTCCGTCTTCCTCGTTCTGTTTATCTTCTTCCTCGTCGTTCTTG                         AGGCCCCGGAGAAGATAGAAGCCAAAGACGACAAGTTCATATGTGTGGTTG
genomic: GTTTGTTTCCGTCTTCCTCGTTCTGTTTATCTTCTTCCTCGTCGTTCTTGgtaagtactg ... caatatgcagAGGCCCCGGAGAAGATAGAAGCCAAAGACGACAAGTTCATATGTGTGGTTG
EST: gi|86024495|gb|DR320248.1|DR320248
EST:     GTTTGTTTCCGTCTTCCTCGTTCTGTTTATCTTCTTCCTCGTCGTTCTTG                         AGGCCCCGGAGAAGATAGAAGCCAAAGACGACAAGTTCATATGTGTGGTTG
genomic: GTTTGTTTCCGTCTTCCTCGTTCTGTTTATCTTCTTCCTCGTCGTTCTTGgtaagtactg ... caatatgcagAGGCCCCGGAGAAGATAGAAGCCAAAGACGACAAGTTCATATGTGTGGTTG
EST: gi|124844288|gb|EH928725.1|EH928725
EST:     GTTTGTTTCCGTCTTCCTCGTTCTGTTTATCTTCTTCCTCGTCGTTCTTG                         AGGCCCCGGAG
genomic: GTTTGTTTCCGTCTTCCTCGTTCTGTTTATCTTCTTCCTCGTCGTTCTTGgtaagtactg ... caatatgcagAGGCCCCGGAG
EST: gi|86024496|gb|DR320249.1|DR320249
EST:     GTTTGTTTCCGTCTTCCTCGTTCTGTTTATCTTCTTCCTCGTCGTTCTTG                         AGGCCCCGGAGAAGATAGAAGCCAAAGACGACAAGTTCATATGTGTGGTTG
genomic: GTTTGTTTCCGTCTTCCTCGTTCTGTTTATCTTCTTCCTCGTCGTTCTTGgtaagtactg ... caatatgcagAGGCCCCGGAGAAGATAGAAGCCAAAGACGACAAGTTCATATGTGTGGTTG