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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACAGCTAAAAAGCGCTTTGGGACAAGCTGCCACAACGTTGCAGCAGCTTCCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTAgtaagctactttatccattttttatacatttaaccattttccgctcaaatctgcactgaaccaactagtgatgtttgcttcag

Basic information

species Arabidopsis thaliana
transcript AT2G42130.5
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124913284|gb|EH987158.1|EH987158
EST:     TCCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTA                         GTGGATCCTTT
genomic: TCCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTAgtaagctact ... tttgcttcagGTGGATCCTTT
EST: gi|116394664|gb|EG437256.1|EG437256
EST:     TCCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTA                         GTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTC
genomic: TCCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTAgtaagctact ... tttgcttcagGTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTC
EST: gi|116394666|gb|EG437258.1|EG437258
EST:     TCCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTA                         GTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTC
genomic: TCCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTAgtaagctact ... tttgcttcagGTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTC
EST: gi|19877874|gb|AU238705.1|AU238705
EST:     TCCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTA                         GTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTC
genomic: TCCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTAgtaagctact ... tttgcttcagGTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTC
EST: gi|116394674|gb|EG437266.1|EG437266
EST:     TCCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTA                         GTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTC
genomic: TCCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTAgtaagctact ... tttgcttcagGTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTC
EST: gi|116480998|gb|EG523590.1|EG523590
EST:     TCCTGCTTTTATCAAGGATACTCTAGCCAGTGGTTTGAGAATTCCCCTTA                         GTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTC
genomic: TCCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTAgtaagctact ... tttgcttcagGTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTC
EST: gi|116480981|gb|EG523573.1|EG523573
EST:     TCCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTA                         GTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTC
genomic: TCCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTAgtaagctact ... tttgcttcagGTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTC
EST: gi|125275565|gb|EL289650.1|EL289650
EST:     TTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTA                         GTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTC
genomic: TTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTAgtaagctact ... tttgcttcagGTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTC
EST: gi|116394672|gb|EG437264.1|EG437264
EST:     TCCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTA                         GTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTC
genomic: TCCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTAgtaagctact ... tttgcttcagGTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTC
EST: gi|116394269|gb|EG436861.1|EG436861
EST:     TCCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTA                         GTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTC
genomic: TCCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTAgtaagctact ... tttgcttcagGTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTC