1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtctgtacttatcattttctcatcttaaagctcaccaaactttattcaacgttttaagtgttttgccatctgattgtattgtttcagGAGGTTTCCTTCAACATTGGCGAATTTATCAAGAATGGAGATACTGATCAAGGATGCTAACGCAAAGGCGACTGCAAATATCAAACTTTTGAACTCG
species | Arabidopsis thaliana |
transcript | AT2G42130.4 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGTTTGGATCTGGAAGTCCTGGTTTACTCGCTGCTCAAGTTATATTCGA GAGGTTTCCTTCAACATTGGCGAATTTATCAAGAATGGAGATACTGATCAAEST: gi|116394262|gb|EG436854.1|EG436854
genomic: TGGTTTGGATCTGGAAGTCCTGGTTTACTCGCTGCTCGAGTTATATTCGAgtctgtactt ... attgtttcagGAGGTTTCCTTCAACATTGGCGAATTTATCAAGAATGGAGATACTGATCAA
EST: TGGTTTGGATCTGGAAGTCCTGGTTTACTCGCTGCTCGAGTTATATTCGA GAGGTTTCCTTCAACATTGGCGAATTTATCAAGAATGGAGATACTGATCAAEST: gi|116394258|gb|EG436850.1|EG436850
genomic: TGGTTTGGATCTGGAAGTCCTGGTTTACTCGCTGCTCGAGTTATATTCGAgtctgtactt ... attgtttcagGAGGTTTCCTTCAACATTGGCGAATTTATCAAGAATGGAGATACTGATCAA
EST: TGGTTTGGATCTGGAAGTCCTGGTTTACTCGCTGCTCGAGTTATATTCGA GAGGTTTCCTTCAACATTGGCGAATTTATCAAGEST: gi|116394668|gb|EG437260.1|EG437260
genomic: TGGTTTGGATCTGGAAGTCCTGGTTTACTCGCTGCTCGAGTTATATTCGAgtctgtactt ... attgtttcagGAGGTTTCCTTCAACATTGGCGAATTTATCAAG
EST: TGGTTTGGATCTGGAAGTCCTGGTTTACTCGCTGCTCGAGTTATATTCGA GAGGTTTCCTTCAACATTGGCGAATTTATCAAGAATGGGGATACTGATCAAEST: gi|116480981|gb|EG523573.1|EG523573
genomic: TGGTTTGGATCTGGAAGTCCTGGTTTACTCGCTGCTCGAGTTATATTCGAgtctgtactt ... attgtttcagGAGGTTTCCTTCAACATTGGCGAATTTATCAAGAATGGAGATACTGATCAA
EST: TGGTTTGGATCTGGAAGTCCTGGTTTACTCGCTGCTCGAGTTATATTCGA GAGGTTTCCTTCAACATTGGCGAATTTATCAAGAATGGAGATACTGATCAAEST: gi|19877874|gb|AU238705.1|AU238705
genomic: TGGTTTGGATCTGGAAGTCCTGGTTTACTCGCTGCTCGAGTTATATTCGAgtctgtactt ... attgtttcagGAGGTTTCCTTCAACATTGGCGAATTTATCAAGAATGGAGATACTGATCAA
EST: GTTTACTCGCTGCTCGAGTTATATTCGA GAGGTTTCCTTCAACATTGGCGAATTTATCAAGAATGGAGATACTGATCAAEST: gi|116394674|gb|EG437266.1|EG437266
genomic: GTTTACTCGCTGCTCGAGTTATATTCGAgtctgtactt ... attgtttcagGAGGTTTCCTTCAACATTGGCGAATTTATCAAGAATGGAGATACTGATCAA
EST: GTTTACTCGCTGCTCGAGTTATA-TCAGA GAGGTTTCCTTCAACATTGGCGAATTTATCAAGAATGGAGATACTGATCAEST: gi|116394667|gb|EG437259.1|EG437259
genomic: GTTTACTCGCTGCTCGAGTTATATTC-GAgtctgtactt ... attgtttcagGAGGTTTCCTTCAACATTGGCGAATTTATCAAGAATGGAGATACTGATCA
EST: TGGTTTGGATCTGGAAGTCCTGGTTTACTCGCTGCTCGAGTTATATTCGA GAGGTTTCCTTCAACATTGGCGAATTTATCAAGAATGGAGATACTGATCAAEST: gi|116480998|gb|EG523590.1|EG523590
genomic: TGGTTTGGATCTGGAAGTCCTGGTTTACTCGCTGCTCGAGTTATATTCGAgtctgtactt ... attgtttcagGAGGTTTCCTTCAACATTGGCGAATTTATCAAGAATGGAGATACTGATCAA
EST: TGGTTTGGATCTGGAAGTCCTGGTTTACTCGCTGCTCGAGTTATATTCGA GAGGTTTCCTTCAACATTGGCGAATTTATCAAGAATGGAGATACTGATCAAEST: gi|116394675|gb|EG437267.1|EG437267
genomic: TGGTTTGGATCTGGAAGTCCTGGTTTACTCGCTGCTCGAGTTATATTCGAgtctgtactt ... attgtttcagGAGGTTTCCTTCAACATTGGCGAATTTATCAAGAATGGAGATACTGATCAA
EST: TGGTTTGGATCTGGAAGTCCTGGTTTACTCGCTGCTCGAGTTATATTCGA GAGGTTTCCTTCAACATTGGCGAATTTATCAAGAATGGAGATACTGATCAAEST: gi|116394268|gb|EG436860.1|EG436860
genomic: TGGTTTGGATCTGGAAGTCCTGGTTTACTCGCTGCTCGAGTTATATTCGAgtctgtactt ... attgtttcagGAGGTTTCCTTCAACATTGGCGAATTTATCAAGAATGGAGATACTGATCAA
EST: TGGTTTGGATCTGGAAGTCCTGGTTTACTCGCTGCTCGAGTTATATTCGA GAGGTTTCCTTCAACATTGGCGAATTTATCAAGAATGGAGATACTGATCAAEST: gi|116394672|gb|EG437264.1|EG437264
genomic: TGGTTTGGATCTGGAAGTCCTGGTTTACTCGCTGCTCGAGTTATATTCGAgtctgtactt ... attgtttcagGAGGTTTCCTTCAACATTGGCGAATTTATCAAGAATGGAGATACTGATCAA
EST: T-GTTTGGATCT-GAAGTCCTGG-TTACTCGCTGCTCGAGTTATATTCGA GAGGTTTCCTTCACCATTGGCGAATTTATCAAGAATGGAGATACTGATCAAEST: gi|116394264|gb|EG436856.1|EG436856
genomic: TGGTTTGGATCTGGAAGTCCTGGTTTACTCGCTGCTCGAGTTATATTCGAgtctgtactt ... attgtttcagGAGGTTTCCTTCAACATTGGCGAATTTATCAAGAATGGAGATACTGATCAA
EST: TGGTTTGGATCTGGAAGTCCTGGTTTACTCGCTGCTCGAGTTATATTCGA GAGGTTTCCTTCAACATTGGCGAATTTATCAAGAATGGAGATACTGATCAAEST: gi|116394271|gb|EG436863.1|EG436863
genomic: TGGTTTGGATCTGGAAGTCCTGGTTTACTCGCTGCTCGAGTTATATTCGAgtctgtactt ... attgtttcagGAGGTTTCCTTCAACATTGGCGAATTTATCAAGAATGGAGATACTGATCAA
EST: TGGTTTGGATCTGGAAGTCCTGGTTTACTCGCTGCTCGAGTTATATTCGA GAGGTTTCCTTCAACATTGGCGAATTTATCAAGAATGGAGATACTGATCAAEST: gi|116394267|gb|EG436859.1|EG436859
genomic: TGGTTTGGATCTGGAAGTCCTGGTTTACTCGCTGCTCGAGTTATATTCGAgtctgtactt ... attgtttcagGAGGTTTCCTTCAACATTGGCGAATTTATCAAGAATGGAGATACTGATCAA
EST: TGGTTTGGATCTGGAAGTCCTGGTTTACTCGCTGCTCGAGTTATATTCGA GAGGTTTCCTTCAACATTGGCGAATTTATCAAGAATGGAGATACTGATCAA
genomic: TGGTTTGGATCTGGAAGTCCTGGTTTACTCGCTGCTCGAGTTATATTCGAgtctgtactt ... attgtttcagGAGGTTTCCTTCAACATTGGCGAATTTATCAAGAATGGAGATACTGATCAA
caccaaactttattcaacgttttaagtgttttgccatctgattgtattgtttcagGAGGTTTCCTTCAACATTGGCGAATTTATCAAGAATGGAGATACTGATCAAGGATGCTAACGCAAAGGCGACTGCAAATATCAAACTTTTGAACTCG
ttgtttc CT-rich tract
aactttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgtacttatcattttctcatcttaaagctcaccaaactttattcaacgttttaagtgttttgccatctgattgtattgtttcagGAGGTTTCCTTCAACATTGGCGAATTTATCAAGAATGGAGATACTGATCAAGGATGCTAACGCAAAGGCGACTGCAAATATCAAACTTTTGAACTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG