1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GTCTCCTTGTTTCGAAGGCAGGTGGAATTTTGAGTGGTTTGGATCTGGAAGTCCTGGTTTACTCGCTGCTCGAGTTATATTCGAgtctgtacttatcattttctcatcttaaagctcaccaaactttattcaacgttttaagtgttttgccatctgattgtattgtttcag
species | Arabidopsis thaliana |
transcript | AT2G42130.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGGTTTGGATCTGGAAGTCCTGGTTTACTCGCTGCTCAAGTTATATTCGA GAGGTTTCCTTCAACATTGGCGAATTTATCAAGAATGGAGATACTGATCAAEST: gi|116394262|gb|EG436854.1|EG436854
genomic: TGGTTTGGATCTGGAAGTCCTGGTTTACTCGCTGCTCGAGTTATATTCGAgtctgtactt ... attgtttcagGAGGTTTCCTTCAACATTGGCGAATTTATCAAGAATGGAGATACTGATCAA
EST: TGGTTTGGATCTGGAAGTCCTGGTTTACTCGCTGCTCGAGTTATATTCGA GAGGTTTCCTTCAACATTGGCGAATTTATCAAGAATGGAGATACTGATCAAEST: gi|116394258|gb|EG436850.1|EG436850
genomic: TGGTTTGGATCTGGAAGTCCTGGTTTACTCGCTGCTCGAGTTATATTCGAgtctgtactt ... attgtttcagGAGGTTTCCTTCAACATTGGCGAATTTATCAAGAATGGAGATACTGATCAA
EST: TGGTTTGGATCTGGAAGTCCTGGTTTACTCGCTGCTCGAGTTATATTCGA GAGGTTTCCTTCAACATTGGCGAATTTATCAAGEST: gi|116394668|gb|EG437260.1|EG437260
genomic: TGGTTTGGATCTGGAAGTCCTGGTTTACTCGCTGCTCGAGTTATATTCGAgtctgtactt ... attgtttcagGAGGTTTCCTTCAACATTGGCGAATTTATCAAG
EST: TGGTTTGGATCTGGAAGTCCTGGTTTACTCGCTGCTCGAGTTATATTCGA GAGGTTTCCTTCAACATTGGCGAATTTATCAAGAATGGGGATACTGATCAAEST: gi|116394267|gb|EG436859.1|EG436859
genomic: TGGTTTGGATCTGGAAGTCCTGGTTTACTCGCTGCTCGAGTTATATTCGAgtctgtactt ... attgtttcagGAGGTTTCCTTCAACATTGGCGAATTTATCAAGAATGGAGATACTGATCAA
EST: TGGTTTGGATCTGGAAGTCCTGGTTTACTCGCTGCTCGAGTTATATTCGA GAGGTTTCCTTCAACATTGGCGAATTTATCAAGAATGGAGATACTGATCAAEST: gi|116394271|gb|EG436863.1|EG436863
genomic: TGGTTTGGATCTGGAAGTCCTGGTTTACTCGCTGCTCGAGTTATATTCGAgtctgtactt ... attgtttcagGAGGTTTCCTTCAACATTGGCGAATTTATCAAGAATGGAGATACTGATCAA
EST: TGGTTTGGATCTGGAAGTCCTGGTTTACTCGCTGCTCGAGTTATATTCGA GAGGTTTCCTTCAACATTGGCGAATTTATCAAGAATGGAGATACTGATCAAEST: gi|116394264|gb|EG436856.1|EG436856
genomic: TGGTTTGGATCTGGAAGTCCTGGTTTACTCGCTGCTCGAGTTATATTCGAgtctgtactt ... attgtttcagGAGGTTTCCTTCAACATTGGCGAATTTATCAAGAATGGAGATACTGATCAA
EST: TGGTTTGGATCTGGAAGTCCTGGTTTACTCGCTGCTCGAGTTATATTCGA GAGGTTTCCTTCAACATTGGCGAATTTATCAAGAATGGAGATACTGATCAAEST: gi|116394268|gb|EG436860.1|EG436860
genomic: TGGTTTGGATCTGGAAGTCCTGGTTTACTCGCTGCTCGAGTTATATTCGAgtctgtactt ... attgtttcagGAGGTTTCCTTCAACATTGGCGAATTTATCAAGAATGGAGATACTGATCAA
EST: TGGTTTGGATCTGGAAGTCCTGGTTTACTCGCTGCTCGAGTTATATTCGA GAGGTTTCCTTCAACATTGGCGAATTTATCAAGAATGGAGATACTGATCAA
genomic: TGGTTTGGATCTGGAAGTCCTGGTTTACTCGCTGCTCGAGTTATATTCGAgtctgtactt ... attgtttcagGAGGTTTCCTTCAACATTGGCGAATTTATCAAGAATGGAGATACTGATCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCTCCTTGTTTCGAAGGCAGGTGGAATTTTGAGTGGTTTGGATCTGGAAGTCCTGGTTTACTCGCTGCTCGAGTTATATTCGAgtctgtacttatcattttctcatcttaaagctcaccaaactttattcaacgttttaagtgttttgccatctgattgtattgtttcag
- - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT