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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactatgttctgacttttcttcactcactatgtctcaggctaacacttgttggagtcttagttgctaacactagtctaatgcttgtgacagGTGCAAGAGTAGTAATCAGTCACCCGCAAGGTAGACTAGGCTTGGAGCAGCAAAGGAAAGAGTTTTCAGATGTGGTCGTCTCTGATTTACCTGATGAGTC

Basic information

species Arabidopsis thaliana
transcript AT2G41950.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116391201|gb|EG433793.1|EG433793
EST:     CCTCGACGAACTGTTCAAGACACTCTCTCAACGTTGTTCGTCAG                         GTGCAAGAGTAGTAATCAGTCACCCGCAAGGTAGACTAGGCTTGGAGCAGC
genomic: CCTCGACGAACTGTTCAAGACACTCTCTCAACGTTGTTCCTCAGgtactatgtt ... cttgtgacagGTGCAAGAGTAGTAATCAGTCACCCGCAAGGTAGACTAGGCTTGGAGCAGC
EST: gi|47828627|gb|CK118311.1|CK118311
EST:     TTTTGACCTCGACGAACTGTTCAAGACACTCTCTCAACGTTGTTCCTCAG                         GTGCAAGAGTAGTAATCAGTCACCC
genomic: TTTTGACCTCGACGAACTGTTCAAGACACTCTCTCAACGTTGTTCCTCAGgtactatgtt ... cttgtgacagGTGCAAGAGTAGTAATCAGTCACCC
EST: gi|125244105|gb|EL258190.1|EL258190
EST:     AAGACACTCTCTCAACGTTGTTCCTCAG                         GTTGTCAAGAGTAGTAATCAGTCACCCGCAAGGTAGACTAGGCTTGGAGCA
genomic: AAGACACTCTCTCAACGTTGTTCCTCAGgtactatgtt ... cttgtgacagG-TG-CAAGAGTAGTAATCAGTCACCCGCAAGGTAGACTAGGCTTGGAGCA
EST: gi|116391217|gb|EG433809.1|EG433809
EST:     TTTTGACCTCGACGAACTGTTCAAGACACTCTCTCAACGTTGTTCCTCAG                         GTGCAAGGGTAGTAATCAGTCACCCGCAAGGTAGACTAGGCTTGGAGCAGC
genomic: TTTTGACCTCGACGAACTGTTCAAGACACTCTCTCAACGTTGTTCCTCAGgtactatgtt ... cttgtgacagGTGCAAGAGTAGTAATCAGTCACCCGCAAGGTAGACTAGGCTTGGAGCAGC
EST: gi|116391219|gb|EG433811.1|EG433811
EST:     TTTTGACCTCGACGAACTGTTCAAGACACTCTCTCAACGTTGTTCCTCAG                         GTGCAAGGGTAGTAATCAGTCACCCGCAAGGTAGACTAGGCTTGGAGCAGC
genomic: TTTTGACCTCGACGAACTGTTCAAGACACTCTCTCAACGTTGTTCCTCAGgtactatgtt ... cttgtgacagGTGCAAGAGTAGTAATCAGTCACCCGCAAGGTAGACTAGGCTTGGAGCAGC
EST: gi|116391228|gb|EG433820.1|EG433820
EST:     TTTTGACCTCGACGAACTGTTCAAGACACTCTCTCAACGTTGTTCCTCAG                         GTGCAAGAGTAGTAATCAGTCACCCGCAAGGTAGACTAGGCTTGGAGCAGC
genomic: TTTTGACCTCGACGAACTGTTCAAGACACTCTCTCAACGTTGTTCCTCAGgtactatgtt ... cttgtgacagGTGCAAGAGTAGTAATCAGTCACCCGCAAGGTAGACTAGGCTTGGAGCAGC
EST: gi|116391224|gb|EG433816.1|EG433816
EST:     TTTTGACCTCGACGAACTGTTCAAGACACTCTCTCAACGTTGTTCCTCAG                         GTGCAAGAGTAGTAATCAGTCACCCGCAAGGTAGACTAGGCTTGGAGCAGC
genomic: TTTTGACCTCGACGAACTGTTCAAGACACTCTCTCAACGTTGTTCCTCAGgtactatgtt ... cttgtgacagGTGCAAGAGTAGTAATCAGTCACCCGCAAGGTAGACTAGGCTTGGAGCAGC
EST: gi|116391212|gb|EG433804.1|EG433804
EST:     TTTTGACCTCGACGAACTGTTCAAGACACTCTCTCAACGTTGTTCCTCAG                         GTGCAAGAGTAGTAATCAGTCACCCGCAAGGTAGACTAGGCTTGGAGCAGC
genomic: TTTTGACCTCGACGAACTGTTCAAGACACTCTCTCAACGTTGTTCCTCAGgtactatgtt ... cttgtgacagGTGCAAGAGTAGTAATCAGTCACCCGCAAGGTAGACTAGGCTTGGAGCAGC
EST: gi|116391199|gb|EG433791.1|EG433791
EST:     TTTCGACCTCGACGAACTGTTCAAGACACTCTCTCAACGTTGTTCCTCAG                         GTGCAAGAGTAGTAATCAGTCACCCGCAAGGTAGACTAGGCTTGGAGCAGC
genomic: TTTTGACCTCGACGAACTGTTCAAGACACTCTCTCAACGTTGTTCCTCAGgtactatgtt ... cttgtgacagGTGCAAGAGTAGTAATCAGTCACCCGCAAGGTAGACTAGGCTTGGAGCAGC
EST: gi|86075965|gb|DR371722.1|DR371722
EST:     TTTTGACCTCGACGAACTGTTCAAGACACTCTCTCAACGTTGTTCCTCAG                         GTGCAAGAGTAGTAATCAGTCACCCGCAAGGTAGACTAGGCTTGGAGCAGC
genomic: TTTTGACCTCGACGAACTGTTCAAGACACTCTCTCAACGTTGTTCCTCAGgtactatgtt ... cttgtgacagGTGCAAGAGTAGTAATCAGTCACCCGCAAGGTAGACTAGGCTTGGAGCAGC
EST: gi|116391210|gb|EG433802.1|EG433802
EST:     TTTTGACCTGGACGAACTGTTCAAGACACTCTCTCAACGTTGTTCCTCAG                         GTGCAAGAGTAGTAATCAGTCACCCGCAAGGTAGACTAGGCCTGGAGCAGC
genomic: TTTTGACCTCGACGAACTGTTCAAGACACTCTCTCAACGTTGTTCCTCAGgtactatgtt ... cttgtgacagGTGCAAGAGTAGTAATCAGTCACCCGCAAGGTAGACTAGGCTTGGAGCAGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtactatgttctgacttttcttcactcactatgtctcaggctaacacttgttggagtcttagttgctaacactagtctaatgcttgtgacagGTGCAAGAGTAGTAATCAGTCACCCGCAAGGTAGACTAGGCTTGGAGCAGCAAAGGAAAGAGTTTTCAGATGTGGTCGTCTCTGATTTACCTGATGAGTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG