1 5' 3' |
AATGGGGACTCCGGAATTTCCAGATCTGGGGAAACACTGCTCCGTCGATGTTTGCAAGCAAATCGATTTCTTGCCTTTCACCTGCGACCGTTGCCTACAGgttcctttctccttctctccttctctccttctctctgtttatattcacatgcaaagactcgatttttatgttttcgcgaatggtgtttgactctgactga...
species | Arabidopsis thaliana |
transcript | AT2G41835.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTTGCACGCAAATCGATTTCTTGCCTTTCACCTGCGACCGTTGCCTACAG GTGTTTTGTTTGGATCATCGAAGCTATATGAAACATAGTTGTCCAAAAGGCEST: gi|116468090|gb|EG510682.1|EG510682
genomic: TTTGCAAGCAAATCGATTTCTTGCCTTTCACCTGCGACCGTTGCCTACAGgttcctttct ... atttttacagGTGTTTTGTTTGGATCATCGAAGCTATATGAAACATAGTTGTCCAAAAGGC
EST: TTTGCACGCAAATCGATTTCTTGCCTTTCACCTGCGACCGTTGCCTACAG GTGTTTTGTTTGGATCATCGAAGCTATATGAAACATAGTTGTCCAAAAGGC
genomic: TTTGCAAGCAAATCGATTTCTTGCCTTTCACCTGCGACCGTTGCCTACAGgttcctttct ... atttttacagGTGTTTTGTTTGGATCATCGAAGCTATATGAAACATAGTTGTCCAAAAGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATGGGGACTCCGGAATTTCCAGATCTGGGGAAACACTGCTCCGTCGATGTTTGCAAGCAAATCGATTTCTTGCCTTTCACCTGCGACCGTTGCCTACAGgttcctttctccttctctccttctctccttctctctgtttatattcacatgcaaagactcgatttttatgttttcgcgaatggtgtttgactctgactga
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttctctct