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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataaatacgcttcctttatgcaatctccctaattcgtagtttttccttgggatcaatggcttggcttagtttgttgtatttatgtactgcatgaaagtttgaatttttacttcccttttcatgttattgttttgagtttccaattgctgttttgttgtctctttgaagATAATGGATGAAAAAGGAGACAACTCATTAGCATTGCTTCCCGCCAAACTTCCTATGCGCATGTGTAGCACACGAG

Basic information

species Arabidopsis thaliana
transcript AT2G40910.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116388234|gb|EG430826.1|EG430826
EST:     GTCAGAGCGTTCCCCAGGTCGTCTCTCTCAGAGATTCCGATCAACTTCAG                         ATAATGGATGAAAAAGGAGACAACTCATTAGCATTGCTTCCCGCCAAACTT
genomic: GTCAGAGCGTTCCCCAGGTCGTCTCTCTCAGAGATTCCGATCAACTTCAGgtataaatac ... ctctttgaagATAATGGATGAAAAAGGAGACAACTCATTAGCATTGCTTCCCGCCAAACTT
EST: gi|116388247|gb|EG430839.1|EG430839
EST:     GTCAGAGCGTTCCCCAGGTCGTCTCTCTCAGAGATTCCGATCAACTTCAG                         ATAATGGATGAAAAAGGAGACAACTCATTAGCATTGCTTCCCGCCAAACTT
genomic: GTCAGAGCGTTCCCCAGGTCGTCTCTCTCAGAGATTCCGATCAACTTCAGgtataaatac ... ctctttgaagATAATGGATGAAAAAGGAGACAACTCATTAGCATTGCTTCCCGCCAAACTT
EST: gi|116388232|gb|EG430824.1|EG430824
EST:     GTCAGAGCGTTCCCCAGGTCGTCTCTCTCAGAGATTCCGATCAACTTCAG                         ATAATGGATGAAAAAGGAGACAACTCATTAGCATTGCTTCCCGCCAAACTT
genomic: GTCAGAGCGTTCCCCAGGTCGTCTCTCTCAGAGATTCCGATCAACTTCAGgtataaatac ... ctctttgaagATAATGGATGAAAAAGGAGACAACTCATTAGCATTGCTTCCCGCCAAACTT
EST: gi|116388254|gb|EG430846.1|EG430846
EST:     GTCAGAGCGTCCCCCAGGTCGTCTCTCTCAGAGATTCCGATCAACTTCAG                         ATAATGGATGAAAAAGGAGACAACTCATTAGCATTGCTTCCCGCCAAACTT
genomic: GTCAGAGCGTTCCCCAGGTCGTCTCTCTCAGAGATTCCGATCAACTTCAGgtataaatac ... ctctttgaagATAATGGATGAAAAAGGAGACAACTCATTAGCATTGCTTCCCGCCAAACTT
EST: gi|116388253|gb|EG430845.1|EG430845
EST:     GTCAGAGCGTTCCCCAGGTCGTCTCTCTCAGAGATTCCGATCAACTTCAG                         ATAATGGATGAAAAAGGAGACAACTCATTAGCATTGCTTCCCGCCAAACTT
genomic: GTCAGAGCGTTCCCCAGGTCGTCTCTCTCAGAGATTCCGATCAACTTCAGgtataaatac ... ctctttgaagATAATGGATGAAAAAGGAGACAACTCATTAGCATTGCTTCCCGCCAAACTT
EST: gi|116388252|gb|EG430844.1|EG430844
EST:     GTCAGAGCGTTCCCCAGGTCGTCTCTCTCAGAGATTCCGATCAACTTCAG                         ATAATGGATGAAAAAGGAGACAACTCATTAGCATTGCTTCCCGCCAAACTT
genomic: GTCAGAGCGTTCCCCAGGTCGTCTCTCTCAGAGATTCCGATCAACTTCAGgtataaatac ... ctctttgaagATAATGGATGAAAAAGGAGACAACTCATTAGCATTGCTTCCCGCCAAACTT
EST: gi|116388257|gb|EG430849.1|EG430849
EST:     AGGTCGTCTCTCTCAGAGATTCCGATCAACTTCAG                         ATAATGGATGAAAAAGGAGACAACTCATTAGCATTGCTTCCCGCCAAACTT
genomic: AGGTCGTCTCTCTCAGAGATTCCGATCAACTTCAGgtataaatac ... ctctttgaagATAATGGATGAAAAAGGAGACAACTCATTAGCATTGCTTCCCGCCAAACTT
EST: gi|116388258|gb|EG430850.1|EG430850
EST:     GTCAGAGCGTTCCCCAGGTCGTCTCTCTCAGAGATTCCGATCAACTTCAG                         ATAATGGATGAAAAAGGAGACAACTCATTAGCATTGCTTCCCGCCAAACTT
genomic: GTCAGAGCGTTCCCCAGGTCGTCTCTCTCAGAGATTCCGATCAACTTCAGgtataaatac ... ctctttgaagATAATGGATGAAAAAGGAGACAACTCATTAGCATTGCTTCCCGCCAAACTT
EST: gi|116388255|gb|EG430847.1|EG430847
EST:     GTCAGAGCGTTCCCCAGGTCGTCTCTCTCAGAGATTCCGATCAACTTCAG                         ATAATGGATGAAAAAGGAGACAACTCATTAGCATTGCTTCCCGCCAAACTT
genomic: GTCAGAGCGTTCCCCAGGTCGTCTCTCTCAGAGATTCCGATCAACTTCAGgtataaatac ... ctctttgaagATAATGGATGAAAAAGGAGACAACTCATTAGCATTGCTTCCCGCCAAACTT
EST: gi|116388233|gb|EG430825.1|EG430825
EST:     GTCAGAGCGTTCCCCAGGTCGTCTCTCTCAGAGATTCCGATCAACTTCAG                         ATAATGGATGAAAAAGGAGACAACTCATTAGCATTGCTTCCCGCCAAACTT
genomic: GTCAGAGCGTTCCCCAGGTCGTCTCTCTCAGAGATTCCGATCAACTTCAGgtataaatac ... ctctttgaagATAATGGATGAAAAAGGAGACAACTCATTAGCATTGCTTCCCGCCAAACTT
EST: gi|116388230|gb|EG430822.1|EG430822
EST:     GTCAGAGCGTTCCCCAGGTCGTCTCTCTCAGAGATTCCGATCAACTTCAG                         ATAATGGATGAAAAAGGAGACAACTCATTAGCATTGCTTCCCGCCAAACTT
genomic: GTCAGAGCGTTCCCCAGGTCGTCTCTCTCAGAGATTCCGATCAACTTCAGgtataaatac ... ctctttgaagATAATGGATGAAAAAGGAGACAACTCATTAGCATTGCTTCCCGCCAAACTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttttcatgttattgttttgagtttccaattgctgttttgttgtctctttgaagATAATGGATGAAAAAGGAGACAACTCATTAGCATTGCTTCCCGCCAAACTTCCTATGCGCATGTGTAGCACACGAG
                                    ttttgttgtctcttt  CT-rich tract
          ttattgtttt  TA-rich tract