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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttctgtggcttatcaattgcactaccaaagattgttcacattttcgctgttttatttaataagctccccccactttctctccacagGTGCAAAGGTCTACGGTTTGAGTCAGCGTGGAGTCAATACCAGGAGGATCCAAATCTGAGTACTGTTAGTCAACATATATGGACTAGTTCAAGTTGATCT

Basic information

species Arabidopsis thaliana
transcript AT2G39910.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86085421|gb|DR381180.1|DR381180
EST:     CGCGATGATATTAGACCTCTTATCCTCCGTATCTTGATGCTACTCCGCCA                         GTGCAAAGGTCTACGGTTTGAGTCAGCGTGGAGTCAATACCAGGAGGATCC
genomic: CGCGATGATATTAGACCTCTTATCCTCCGTATCTTGATGCTACTCCGCCAgtatgtttct ... ctctccacagGTGCAAAGGTCTACGGTTTGAGTCAGCGTGGAGTCAATACCAGGAGGATCC
EST: gi|86085113|gb|DR380872.1|DR380872
EST:     CGCGATGATATTAGACCTCTTATCCTCCGTATCTTGATGCTACTCCGCCA                         GTGCAAAGGTCTACGGTTTGAGTCAGCGTGGAGTCAATACCAGGAGGATCC
genomic: CGCGATGATATTAGACCTCTTATCCTCCGTATCTTGATGCTACTCCGCCAgtatgtttct ... ctctccacagGTGCAAAGGTCTACGGTTTGAGTCAGCGTGGAGTCAATACCAGGAGGATCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgttcacattttcgctgttttatttaataagctccccccactttctctccacagGTGCAAAGGTCTACGGTTTGAGTCAGCGTGGAGTCAATACCAGGAGGATCCAAATCTGAGTACTGTTAGTCAACATATATGGACTAGTTCAAGTTGATCT
                      atttaat  putative branch site (score: 4)
                                ctccccccactttctc  putative PPT
                tgttttatttaataa  TA-rich tract