1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aatgaatcatttttttatgtgctcaagttattgtatggattgttctgtttctagcatgttttggttagacattgttaagatctgacgtttgcattttcagGAAAAGGAGTTAGAGCATCATCAAGATGAAGGCACTCATTCTTGTTGGAGGCTTCGGCACTCGCTTGAGACCATTGACTCTCAGTTTCCCAAAGCCCCTT
species | Arabidopsis thaliana |
transcript | AT2G39770.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TACAGCCATTTCCCAGCTCAGATCTCTGATCCGGTGAGATCTCTCTCAAG GAAAAGGAGTTAGAGCATCATCAAGATGAAGGCACTCATTCTTGTTGGAGGEST: gi|116433537|gb|EG476129.1|EG476129
genomic: TACAGCCATTTCCCAGCTCAGATCTCTGATCCGGTGAGATCTCTCTCAAGgtaatgcccc ... gcattttcagGAAAAGGAGTTAGAGCATCATCAAGATGAAGGCACTCATTCTTGTTGGAGG
EST: TACAGCCATTTCCCAGCTCAAATCTCTGATCCGGTGAGATCTCTCTCAAG GAAAAGGAGTTAGAGCATCATCAAGATGAAGGCACTCATTCTTGTTGGAGGEST: gi|116433540|gb|EG476132.1|EG476132
genomic: TACAGCCATTTCCCAGCTCAGATCTCTGATCCGGTGAGATCTCTCTCAAGgtaatgcccc ... gcattttcagGAAAAGGAGTTAGAGCATCATCAAGATGAAGGCACTCATTCTTGTTGGAGG
EST: TACAGCCATTTCCCAGCTCAGATCTCTGATCCGGTGAGATCTCTCTCAAG GAAAAGGAGTTAGAGCATCATCAAGATGAAGGCACTCATTCTTGTTGGAGG
genomic: TACAGCCATTTCCCAGCTCAGATCTCTGATCCGGTGAGATCTCTCTCAAGgtaatgcccc ... gcattttcagGAAAAGGAGTTAGAGCATCATCAAGATGAAGGCACTCATTCTTGTTGGAGG
tgtttctagcatgttttggttagacattgttaagatctgacgtttgcattttcagGAAAAGGAGTTAGAGCATCATCAAGATGAAGGCACTCATTCTTGTTGGAGGCTTCGGCACTCGCTTGAGACCATTGACTCTCAGTTTCCCAAAGCCCCTT
atctgac putative branch site (score: 3)
cattttc putative PPT
attgttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatgaatcatttttttatgtgctcaagttattgtatggattgttctgtttctagcatgttttggttagacattgttaagatctgacgtttgcattttcagGAAAAGGAGTTAGAGCATCATCAAGATGAAGGCACTCATTCTTGTTGGAGGCTTCGGCACTCGCTTGAGACCATTGACTCTCAGTTTCCCAAAGCCCCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttttgg