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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcacaatttctaaaattattcatgagactatatggttaatggcatgaacagagtaaaacagagcaaaaacagagcaaaacagagtaaatcttggatagaaacacatactaattgtatgagtgattgtatttgtagGTTGGTTGCCGGCTATAGTCTCGTTTGCGTTTTTGAGAACGATAAGAATAATGAAAGTGAAAAGACAGACAAACGAACTAAAGGTGTTCTATAACTTCCT

Basic information

species Arabidopsis thaliana
transcript AT2G39210.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116474506|gb|EG517098.1|EG517098
EST:     CTACCGTGCCTTTTATGGTGAAGACACAAAAGAGCTCATCTTGATGATTG                         GTTGGTTGCCGGCTATAGTCTCGTTTGCGTTTTTGAGAACGATAAGAATAA
genomic: CTACCGTGCCTTTTATGGTGAAGACACAAAAGAGCTCATCTTGATGATTGgtaagcacaa ... gtatttgtagGTTGGTTGCCGGCTATAGTCTCGTTTGCGTTTTTGAGAACGATAAGAATAA
EST: gi|116474504|gb|EG517096.1|EG517096
EST:     CTACCGTGCCTTTTATGGTGAAGACACAAAAGAGCTCATCTTGATGATTG                         GTTGGTTGCCGGCTATAGTCTCGTTTGCGTTTTTGAGAACGATAAGAATAA
genomic: CTACCGTGCCTTTTATGGTGAAGACACAAAAGAGCTCATCTTGATGATTGgtaagcacaa ... gtatttgtagGTTGGTTGCCGGCTATAGTCTCGTTTGCGTTTTTGAGAACGATAAGAATAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agagtaaatcttggatagaaacacatactaattgtatgagtgattgtatttgtagGTTGGTTGCCGGCTATAGTCTCGTTTGCGTTTTTGAGAACGATAAGAATAATGAAAGTGAAAAGACAGACAAACGAACTAAAGGTGTTCTATAACTTCCT
                         tactaat  putative branch site (score: 1)
                        atactaatt  TA-rich tract