1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtactacactaaacatttgagcaagactagagtcaaaaagtattttgaaggtgttttgtttgttccttaagtttttgtgttttaatttggcagGTGGTAAGAGATTCGATTGAGGGTTTTGGAACAGATGAGGATTCGTTGACGAGGGCGATTGTGACGCGTGCAGAGATCGATTTGATGAAAGTAAGAGGAG
species | Arabidopsis thaliana |
transcript | AT2G38760.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGAAGGTGGCAATCTTTTGTATTGATACTCCTGAGAAACACTTTGCAAAG GTGGTAAGAGATTCGATTGAGGGTTTTGGAACAGATGAGGATTCGTTGACGEST: gi|19741011|gb|AU226364.1|AU226364
genomic: TGAAGGTGGCAATCTTTTGTATTGATACTCCTGAGAAACACTTTGCAAAGgtactacact ... aatttggcagGTGGTAAGAGATTCGATTGAGGGTTTTGGAACAGATGAGGATTCGTTGACG
EST: TGAAGGTGGCAATCTTTTGTATTGATACTCCTGAGAAACACTTTGCAAAG GTGGTAAGAGATTCGATTGAGGGTTTTGGAACAGATGAGGATTCGTTGACG
genomic: TGAAGGTGGCAATCTTTTGTATTGATACTCCTGAGAAACACTTTGCAAAGgtactacact ... aatttggcagGTGGTAAGAGATTCGATTGAGGGTTTTGGAACAGATGAGGATTCGTTGACG
agtattttgaaggtgttttgtttgttccttaagtttttgtgttttaatttggcagGTGGTAAGAGATTCGATTGAGGGTTTTGGAACAGATGAGGATTCGTTGACGAGGGCGATTGTGACGCGTGCAGAGATCGATTTGATGAAAGTAAGAGGAG
ttttaat putative branch site (score: 3)
ttaagtttttgtgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactacactaaacatttgagcaagactagagtcaaaaagtattttgaaggtgttttgtttgttccttaagtttttgtgttttaatttggcagGTGGTAAGAGATTCGATTGAGGGTTTTGGAACAGATGAGGATTCGTTGACGAGGGCGATTGTGACGCGTGCAGAGATCGATTTGATGAAAGTAAGAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG