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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattagttcttctttatagttcaagtggattcttatgcttaaacattttggtttgggaattaactatgcatttatgttttctgaaattctcggatagagGCATGACGCGACAGTAAGCACGGTGCATGCGTTTACAAAGGATCCAGAGCACATTACTAGGAAGGCGGATATCGTTATAGCAGCAGCGGGTATACCTAAT

Basic information

species Arabidopsis thaliana
transcript AT2G38660.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86084888|gb|DR380647.1|DR380647
EST:     TCATAGGCAGAAGCAACATCGTTGGACTACCAATGTCTTTATTATTGCAGAG                        
genomic: TCATAGGCAGAAGCAACATCGTTGGACTACCAATGTCTTTATTATTGC--AGgtattagttc ... tcggataga






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttggtttgggaattaactatgcatttatgttttctgaaattctcggatagagGCATGACGCGACAGTAAGCACGGTGCATGCGTTTACAAAGGATCCAGAGCACATTACTAGGAAGGCGGATATCGTTATAGCAGCAGCGGGTATACCTAAT
             aattaac  putative branch site (score: 2)
                                          ttctc  putative PPT
                         atttatgtttt  TA-rich tract