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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttcttcatgttgttgattcttggtaaaaactataaagacagattttagtctgtcaagttttctttatctgtttggagaattcatcttgtgtgttatatagGGTTTTGACATCGATTTCGCCAAGTTCCGCTGCGTTTTCAATTACCGACCAGTTGATCTCGATGACAACGAGTTGGCTTTGGAACCAGAAACTACCAGAG

Basic information

species Arabidopsis thaliana
transcript AT2G37435.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116384819|gb|EG427411.1|EG427411
EST:     CGGCGGAAGAAGAGTATTACCTCATGGTGAAAGAAGTCGAGGATTCCAAG                         GGTTTTGACATCGATTTCGCCAAGTTCCG
genomic: CGGCGGAAGAAGAGTATTACCTCATGGTGAAAGAAGTCGAGGATTCCAAGgttttcttca ... tgttatatagGGTTTTGACATCGATTTCGCCAAGTTCCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagtctgtcaagttttctttatctgtttggagaattcatcttgtgtgttatatagGGTTTTGACATCGATTTCGCCAAGTTCCGCTGCGTTTTCAATTACCGACCAGTTGATCTCGATGACAACGAGTTGGCTTTGGAACCAGAAACTACCAGAG
            ttttctttat  TA-rich tract