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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGATCTCAACAATGGAAAAATTCTTCCATCTAGAACTCGTAAATGTCAACCTTGTTGTGAGGGTTTCTTTTGTCCACAAGGTCTTGCTTGCATGATACgtaagatatccatttacatacatatatgttatatcaacattataagtactaaaactttaatctaacatattcattgttgtttattctctgatttatgtaaacgaag

Basic information

species Arabidopsis thaliana
transcript AT2G37010.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G37010.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv08s0040g01620.t01 (Vitis vinifera), 5'ss of exon 4
TTTGATCTCAACAATGGAAAAATTCTTCCATCTAGAACTCGTAAATGTCAACCTTGTTGTGAGGGTTTCTTTTGTCCACAAGGTCTTGCTTGCATGATACgtaag-atatccatttacatacatatatgttatatcaacattataagtactaaaactttaatctaacatattcattgttgtttattctctgatttatgtaaacgaag
 |||| ||||| |||   ||     | || || || |||||| | |||||||||||||||| ||||||||| || || || || ||| ||||||||||||||||| ||||      |  |  || |||  | |   | ||||  |||   || | | || |  |    ||||   | |     || ||   |||  ||     |   
GTTGAACTCAAAAATTCGAAGGACATGCCTTCAAGGACTCGTGACTGTCAACCTTGTTGTGCGGGTTTCTTCTGCCCCCAGGGCCTTACTTGCATGATACgtaaggatatgataacaactctatttatcctttggaatcattgaaagctttacagcctttacttt---tatttcatctcaagaatcctgc-attgttggtggtg---