Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgtaattgtgaatgttttcaaagcattttctccattagttggacaagttagtctcattgatttcttgattgttacaaattctgcagAGAGAACATTGGATTACTAGGAAGCACCAGAGTTGGAAGCCGCAGAGTTATCCAAATCTCAGCAGGATTTATGATATTCTTCTCAATGCTAGGCAAATTC

Basic information

species Arabidopsis thaliana
transcript AT2G34190.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G34190.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: Vv10s0003g01460.t01 (Vitis vinifera), 3'ss of exon 10
gtaagtgtaattgtga-atgttttcaaagcattttctccattagttggacaagttagtc----------tcattgatttcttgattgttacaaattctgcagAGAGAACATTGGATTACTAGGAAGCACCAGAGTTGGAAGCCGCAGAGTTATCCAAATCTCAGCAGGATTTATGATATTCTTCTCAATGCTAGGCAAATTC
|||||| |  |  |   |   | ||||   ||| |  |  |   ||       ||  |           || || |||| ||       | |||  |  |||||| ||  | ||  | || |||   ||  | |||||||||||||| || || ||||| ||||| || |||||||||||||||||||| ||||        
gtaagtatgctcatactaccctgtcaacaaattcttgctttcgattttttttatttattcttggaatagtccttaatttatttgagaaaaaaaacacaacagAGAAAATGTGGGCCTTCTTGGATCAACTCGCGTTGGAAGCCGCAGGGTCATTCAAATTTCAGCTGGTTTTATGATATTCTTCTCAATACTAG--------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccattagttggacaagttagtctcattgatttcttgattgttacaaattctgcagAGAGAACATTGGATTACTAGGAAGCACCAGAGTTGGAAGCCGCAGAGTTATCCAAATCTCAGCAGGATTTATGATATTCTTCTCAATGCTAGGCAAATTC
                               tcttgat  putative branch site (score: 4)
                                        ttacaaatt  TA-rich tract