1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTAAAATTGGTAGACCAGGGTACCGGGTTACAAAACAGTATGATCCCGAGCTGCAACAAAGATCTCTTCTGTTCCAGgtaagcatctaattgttattgttgaacttcaatgatcatcattagagacttagccagagtaaaatctcactgtgtctgtttactcctcaaacaatgttttacag
species | Arabidopsis thaliana |
transcript | AT2G32600.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTACAAAACAGTATGATCCCGAGCTGCAACAAAGATCTCTTCTGTTCCAG ATTGAATATCCTGAGATAGAGGACAACATAAAGCCAEST: gi|124876913|gb|EH956350.1|EH956350
genomic: TTACAAAACAGTATGATCCCGAGCTGCAACAAAGATCTCTTCTGTTCCAGgtaagcatct ... tgttttacagATTGAATATCCTGAGATAGAGGACAACATAAAGCCA
EST: TTACAAAACAGTATGATCCCGAGCTGCAACAAAGATCTCTTCTGTTCCAG ATTGAATATCCTGAGATAGAGGACAACATAAAGCCAAGACATCGEST: gi|47831635|gb|CK121319.1|CK121319
genomic: TTACAAAACAGTATGATCCCGAGCTGCAACAAAGATCTCTTCTGTTCCAGgtaagcatct ... tgttttacagATTGAATATCCTGAGATAGAGGACAACATAAAGCCAAGACATCG
EST: TTACAAAACAGTATGATCCCGAGCTGCAACAAAGATCTCTTCTGTTCCAG ATTGAATATCCTGAGATAGAGGACAACATAAAGCCAAGACATCGTTTCATG
genomic: TTACAAAACAGTATGATCCCGAGCTGCAACAAAGATCTCTTCTGTTCCAGgtaagcatct ... tgttttacagATTGAATATCCTGAGATAGAGGACAACATAAAGCCAAGACATCGTTTCATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTAAAATTGGTAGACCAGGGTACCGGGTTACAAAACAGTATGATCCCGAGCTGCAACAAAGATCTCTTCTGTTCCAGgtaagcatctaattgttattgttgaacttcaatgatcatcattagagacttagccagagtaaaatctcactgtgtctgtttactcctcaaacaatgttttacag
- - - - - - - - - - - - - - - - - - - - - - - - AGCTGC