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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttgttcttacaaattaagcatcatatgttgtcaatctcgtcataatgatcatgtatttctaaagtcttatggtaataaaacttatgggcgccaaatcatatatgtgtaattagGAGCTTATCCTACGCCGCCAGTGTCTACCGGCCCTTATATGACACCGCCACCGCTCGGTTACCCGACGAGCGACATCAGTCATGCCACGGTGGCTCCGGT

Basic information

species Arabidopsis thaliana
transcript AT2G32190.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116449502|gb|EG492094.1|EG492094
EST:     AATCATAATCTGTTCGAAGATGAGCCAATACAGCCAAAACCAATCTTCAG                         GAGCTTATCCTACGCCGCCAGTGTCTACCGGCCCTTATATGACACCGCCAC
genomic: AATCATAATCTGTTCGAAGATGAGCCAATACAGCCAAAACCAATCTTCAGgtttgttgtt ... gtgtaattagGAGCTTATCCTACGCCGCCAGTGTCTACCGGCCCTTATATGACACCGCCAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctaaagtcttatggtaataaaacttatgggcgccaaatcatatatgtgtaattagGAGCTTATCCTACGCCGCCAGTGTCTACCGGCCCTTATATGACACCGCCACCGCTCGGTTACCCGACGAGCGACATCAGTCATGCCACGGTGGCTCCGGT
 ttctaaa  putative branch site (score: 2)
                                       atatatgtgtaatta  TA-rich tract