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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaccaatgaactgaagtagatgtgtttattgggtcttcaaagttgatattaagcttattatatagtcttctctctaaatccaactcatggtggctccattcagGTATGGGCCTTCGTTCCAATATGCTGGTGATTACACAGACAACAAGGACTTAGACATTTTCAGGAGGCGAAAAACAAGAGTCATAGCTATAGATGCCATG

Basic information

species Arabidopsis thaliana
transcript AT2G31865.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116428034|gb|EG470626.1|EG470626
EST:     AATGAAGCAATTGAGATTGTTGGTGTTGAAAGATTTTCAGGTTATACAGG                         GTATGGGCCTTCGTTCCAATATGCTGGTGATTACACAGACAACAAGGACTT
genomic: AATGAAGCAATTGAGATTGTTGGTGTTGAAAGATTTTCAGGTTATACAGGgtaagtacca ... ctccattcagGTATGGGCCTTCGTTCCAATATGCTGGTGATTACACAGACAACAAGGACTT
EST: gi|116428035|gb|EG470627.1|EG470627
EST:     AATGAAGCAATTGAGATTGTTGGTGTTGAAAGATTTTCAGGTTATACAGG                         GTATGGGCCTTCGTTCCAATATGCTGGTGATTACACAGACAACAAGGACTT
genomic: AATGAAGCAATTGAGATTGTTGGTGTTGAAAGATTTTCAGGTTATACAGGgtaagtacca ... ctccattcagGTATGGGCCTTCGTTCCAATATGCTGGTGATTACACAGACAACAAGGACTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaagcttattatatagtcttctctctaaatccaactcatggtggctccattcagGTATGGGCCTTCGTTCCAATATGCTGGTGATTACACAGACAACAAGGACTTAGACATTTTCAGGAGGCGAAAAACAAGAGTCATAGCTATAGATGCCATG
                       ctctaaa  putative branch site (score: 3)
                                             ctccattc  putative PPT
      ttattatatagtctt  TA-rich tract