1 5' 3' | 2 5' 3' | 3 5' 3' |
TAATCATAAAGAGGACTTTGTCGATATACTGTTATCAATCGAAAGCGAGAAGAGTATTGGATTCCAAGCTCAAAGAGACGACATCAAATTCATGATATTGgtatgatcatttataaaccaattcattaataattctaacaaattaatgcaacatttttattttggactaatgacatgtaaaatgtctacttcatatatatatcag
species | Arabidopsis thaliana |
transcript | AT2G30750.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGAGTATTGGATTCCAAGCTCAAAGAGACGACATCAAATTCATGATATTG GATATGTTTATAGGAGGGACGTCAACAAGTTCAACTCTAEST: gi|301502370|gb|HO207910.1|HO207910
genomic: AGAGTATTGGATTCCAAGCTCAAAGAGACGACATCAAATTCATGATATTGgtatgatcat ... tatatatcagGATATGTTTATAGGAGGGACGTCAACAAGTTCAACTCTA
EST: AGAGTATTGGATTCCAAGCTCAAAGAGACGACATCAAATTCATGATATTG GATATGTTTATAGGAGGGACGTCAACAAGTTCAACTCTACTAGAATGGATA
genomic: AGAGTATTGGATTCCAAGCTCAAAGAGACGACATCAAATTCATGATATTGgtatgatcat ... tatatatcagGATATGTTTATAGGAGGGACGTCAACAAGTTCAACTCTACTAGAATGGATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAATCATAAAGAGGACTTTGTCGATATACTGTTATCAATCGAAAGCGAGAAGAGTATTGGATTCCAAGCTCAAAGAGACGACATCAAATTCATGATATTGgtatgatcatttataaaccaattcattaataattctaacaaattaatgcaacatttttattttggactaatgacatgtaaaatgtctacttcatatatatatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA