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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttataaattttgcttcaatcccccttcccttcatttccttctatcttcagaaaagaaattctttacaatctcttgcttccttcttcttagGTTTCCATGGTTTCAAGACTAAAACATGAGAATCTCATTCAACTGGTTGGTTATTGTGTTGATGAAAACCTCCGTGTTCTTGCTTATGAGTTTGCAACAA

Basic information

species Arabidopsis thaliana
transcript AT2G30740.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124853543|gb|EH937980.1|EH937980
EST:     AAGCTGAAACAAACACCGAGTTCCTGAATCAG                         GTTTCCATGGTTTCAAGACTAAAACATGAGAATCTCGTTCAACTGGTTGGT
genomic: AAGCTGAAACAAACACCGAGTTCCTGAATCAGgttataaatt ... ttcttcttagGTTTCCATGGTTTCAAGACTAAAACATGAGAATCTCATTCAACTGGTTGGT
EST: gi|164231234|gb|ES144966.1|ES144966
EST:     CCGAGTTCCTGAATCAG                         GTTTCCATGGTTTCAAGACTAAAACATGAGAATCTCATTCAACTGGTTGGT
genomic: CCGAGTTCCTGAATCAGgttataaatt ... ttcttcttagGTTTCCATGGTTTCAAGACTAAAACATGAGAATCTCATTCAACTGGTTGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccttctatcttcagaaaagaaattctttacaatctcttgcttccttcttcttagGTTTCCATGGTTTCAAGACTAAAACATGAGAATCTCATTCAACTGGTTGGTTATTGTGTTGATGAAAACCTCCGTGTTCTTGCTTATGAGTTTGCAACAA
                       ttctttacaatctctt  CT-rich tract
               aaaagaaattcttta  TA-rich tract