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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctagctactaatgttacattaaagctttttggtatgttcttacgtttatagaattcccttaatttaagtttaaacgacgatgactttagATCACACCGACACCAGTGAAGAGGCTGTGCAGAACTCACCAAAGCATCACTGTGAATGGTCAGTACCCTGGTCCAACGCTTGTGGTCAGGAACGGTGACT

Basic information

species Arabidopsis thaliana
transcript AT2G30210.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116471568|gb|EG514160.1|EG514160
EST:     CCTACTTCGCTTTCCTCGCTTCTGCTGAACATCACGTCCATCAATTCGTG                         ATCACACCGACACCAGTGAAGAGGCTGTGCAGAACTCACCAAAGCATCACT
genomic: CCTACTTCGCTTTCCTCGCTTCTGCTGAACATCACGTCCATCAATTCGTGgtaagctagc ... atgactttagATCACACCGACACCAGTGAAGAGGCTGTGCAGAACTCACCAAAGCATCACT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttcttacgtttatagaattcccttaatttaagtttaaacgacgatgactttagATCACACCGACACCAGTGAAGAGGCTGTGCAGAACTCACCAAAGCATCACTGTGAATGGTCAGTACCCTGGTCCAACGCTTGTGGTCAGGAACGGTGACT
                        ttaatttaagtttaaa  TA-rich tract