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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACCTGTGGAGAAGCTTGGTTTTGTGAGGACTTTGTTGATTGATAATTATGATAGTTATACATTCAATATATATCAGGCTCTGAGTACTATTAATGGAGgtaacttcatagcatctatctttctcttttgccagtctctatagatggattctatgtcttattcaaactctttatttgtatgatgtgtag

Basic information

species Arabidopsis thaliana
transcript AT2G28880.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G28880.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv13s0019g04180.t01 (Vitis vinifera), 5'ss of exon 1
GAACCTGTGGAGAAGCTTGGTTTTGTGAGGACTTTGTTGATTGATAATTATGATAGTTATACATTCAATATATATCAGGCTCTGAGTACTATTAATGGAGgtaacttcatagcatctatctttctcttttgccagtctctatagatggattctatgtcttattcaaactctttatttgtatgatg-tgtag----------------
|||   |   |      ||   |||||||||| ||||||||||| || ||||||||||| || | |||| | || || |   ||   |   ||||||| ||||| |||      ||| ||||||  | |||| | |  || || ||   |  | |   |||||  |  | ||    |  |||||  || |                 
GAAGTGGCTAATGGAAATGAAATTGTGAGGACATTGTTGATTGACAACTATGATAGTTACACCTACAATGTTTACCAAGAGTTGTCCATCGTTAATGGGGgtaagttc------tctctctttccttgttgctaattact-tacattactattgttatttattttatatattctacttcatgatcctgcaatccatggacttttact

upper sequence: AT2G28880.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv13s0019g04170.t01 (Vitis vinifera), 5'ss of exon 1
GAACCTGTGGAGAAGCTTGGTTTTGTGAGGACTTTGTTGATTGATAATTATGATAGTTATACATTCAATATATATCAGGCTCTGAGTACTATTAATGGAGgtaacttca-tagcatctatctttct--cttttgccagtctctatagatggattctatgtcttattcaaac-tctttatttgtatgatgtgtag------
||  | |   ||||  | |  ||||||||||| ||||||||||| || |||||||||||||||| |||||| || || |   |    |  ||||||||| |||| |||  |  | |||  |  ||   |  ||||   | | | |      |   | ||  |  ||  |   |  ||  |  |   |||  |        
GATGCAGGTCAGAAATTGGAATTTGTGAGGACATTGTTGATTGACAACTATGATAGTTATACATACAATATTTACCAAGAGTTATCCATCATTAATGGATgtaagttctctctcctcttcccctcatgccattgcttttttgttttccaacaccttttgcttgctttgattgttcttgatcctgcaatgcatgacctatc