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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGGATTTCTGTTTTTATCAAGGCAGTGTGGTCGAACATCTTGATGGTCACACTGATATAATCCACAAACAGCTATACAGCGATTGGTTACCTTGgtctgctactcaactttctgccagagttagtgtttttgtttgtcttaatactaacatgctgtagtaacag

Basic information

species Arabidopsis thaliana
transcript AT2G28320.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G28320.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA12G29750.1 (Glycine max), 5'ss of exon 9
ATGGGATTTCTGTTTTTATCAAGGCAGTGTGGTCGAACATCTTGATGGTCACACTGATATAATCCACAAACAGCTATACAGCGATTGGTTACCTTGgtctgctactcaactttctgccagagtta-gtgtttttgtttgtcttaa----tactaacatgct-gtagtaacag-----------------------------
||||||||||||||| ||  | || | |||||| || ||  | |||||||||||||| || || |||||||||||||  ||||||||||| |||||||     ||  | | ||  |  |   | | ||     |  |||| |||     |||||   |  |   | ||| ||                             
ATGGGATTTCTGTTTCTACAAGGGAAATGTGGTGGAGCACTTGGATGGTCACACTGACATTATTCACAAACAGCTATTTAGCGATTGGTTGCCTTGgtaaagaaccgagcctttagtgatgatcatgtaccactacttgttttaggtcctactagtctatttagaataaaagttttattttattcatataatgttttacag

upper sequence: AT2G28320.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA13G40010.1 (Glycine max), 5'ss of exon 9
ATGGGATTTCTGTTTTTATCAAGGCAGTGTGGTCGAACATCTTGATGGTCACACTGATATAATCCACAAACAGCTATACAGCGATTGGTTACCTTGgtctgctactcaactttctgc-cagagttagtgtttttgtttgtcttaatactaacatgctgtagtaacag-----------------------------------
||||||||||||||| ||  |||| | |||||| || ||  | |||||||||||||| || || |||||||| ||||  ||||||||||| |||||||     ||  | | ||  |  | ||    ||     |  |||| ||||   |    |  | || | | |                                    
ATGGGATTTCTGTTTCTACAAAGGAAATGTGGTGGAGCACTTGGATGGTCACACTGACATTATTCACAAACAACTATTTAGCGATTGGTTGCCTTGgtaaagaaccaagcctttagtgctgatcatgtaccactacttgttttaaggttctactagtctatttagaattaaaaaaatatttttttcatataatgttttacag

upper sequence: AT2G28320.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv06s0004g02720.t01 (Vitis vinifera), 5'ss of exon 9
ATGGGATTTCTGTTTTTATCAAGGCAGTGTGGTCGAACATCTTGATGGTCACACTGATATAATCCACAAACAGCTATACAGCGATTGGTTACCTTGgtctgctactcaactttctgcc-agagttagtgtttttgtt----tgtcttaatactaacatgctgta-gtaacag-------------------------
|||||| |||||||||||  | || | |||||| || || ||||||||||| || |||||  | ||||| ||| |||| || ||||||||||||||||  | | |  | |||| ||   | ||  | | ||  |||     | |  ||| |    |||    ||  |  ||                          
ATGGGACTTCTGTTTTTACAAGGGAAATGTGGTGGAGCACCTTGATGGTCATACGGATATTGTTCACAAGCAGTTATATAGAGATTGGTTACCTTGgttagattcaaacctttatgtttatagcaaatattcatgtcacaattttctaagatctccatataatacatgtcattttattgaatcatcataccttgcag