1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...acttctcggtgattagtgtgtttgtgttcttcaaagattgtaaatttgaatagcttggttttgttttctctaatagactgagatatgttatgatgtgtagCTAAACCTCTTCACTGGTGAAAGCAATTTGATGTTATGGTTCCAATGGAAACTCAAGAAGTTACAGATTCTTTACCAAAAGCGCAGAGTAAATCGGGTAG
species | Arabidopsis thaliana |
transcript | AT2G28240.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TAGACGAGGAAGAAGAACCTTGAATCCGACATTTGTTTCTTCATTTTAAG CTAAACCTCTTCACTGGTGAAAGCEST: gi|19875973|gb|AU236804.1|AU236804
genomic: TAGACGAGGAAGAAGAACCTTGAATCCGACATTTGTTTCTTCATTTTAAGgtagggttaa ... tgatgtgtagCTAAACCTCTTCACTGGTGAAAGC
EST: TAGACGAGGAAGAAGAACCTTGAATCCGACATTTGTTTCTTCATTTTAAG CTAAACCTCTTCACTGGTGAAAGCAATTTGATGTTATGGTTCCAATGGAAA
genomic: TAGACGAGGAAGAAGAACCTTGAATCCGACATTTGTTTCTTCATTTTAAGgtagggttaa ... tgatgtgtagCTAAACCTCTTCACTGGTGAAAGCAATTTGATGTTATGGTTCCAATGGAAA
ttgaatagcttggttttgttttctctaatagactgagatatgttatgatgtgtagCTAAACCTCTTCACTGGTGAAAGCAATTTGATGTTATGGTTCCAATGGAAACTCAAGAAGTTACAGATTCTTTACCAAAAGCGCAGAGTAAATCGGGTAG
ctctaat putative branch site (score: 3)
ttttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acttctcggtgattagtgtgtttgtgttcttcaaagattgtaaatttgaatagcttggttttgttttctctaatagactgagatatgttatgatgtgtagCTAAACCTCTTCACTGGTGAAAGCAATTTGATGTTATGGTTCCAATGGAAACTCAAGAAGTTACAGATTCTTTACCAAAAGCGCAGAGTAAATCGGGTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - tgtttgt
- - - - - - - - - - - - - - cttcaaa