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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATTTGATCTCATCCAGAGCTAGACCTTCTGTACCAAACCCTAATTTCACTTCCCCGCGCTTCAACACTTCTTCTCGAATCGAAGGTTCTGTTCCCAGgtgaaattcgttatctttcgatctaaatctgcttagttgttagatatttgtgatgcccttgattgaaagtttggattttgatttgaaatctaaaaag

Basic information

species Arabidopsis thaliana
transcript AT2G27775.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|152033984|gb|AU238593.2|AU238593
EST:     ACTTCCCCGCGCTTCAACACTTCTTCTCGAATCGAAGGTTCTGTTCCCAG                         GTTGCTGCGGCGAGAATTAAGCACACAACAACCATTTCACAGCACCATTGC
genomic: ACTTCCCCGCGCTTCAACACTTCTTCTCGAATCGAAGGTTCTGTTCCCAGgtgaaattcg ... atctaaaaagGTTGCTGCGGCGAGAATTAAGCACACAACAACCATTTCACAGCACCATTGC
EST: gi|164208998|gb|ES130425.1|ES130425
EST:     ACTTCCCCGCGCTTCAACACTTCTTCTCGAATCGAAGGTTCTGTTCCCAG                         GTTGCTGCGGCGAGAATTAAGCACACAACAACC
genomic: ACTTCCCCGCGCTTCAACACTTCTTCTCGAATCGAAGGTTCTGTTCCCAGgtgaaattcg ... atctaaaaagGTTGCTGCGGCGAGAATTAAGCACACAACAACC