Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaattcttaacctgaattattaaaatatatgcagaaatatggcttagtctagctctagaaagtgtaggcataggtattgatattaagattgacagtatctctggtgtcatatattgactatgtttggtcggtatattaatatatgctcatgtttcagAGAGATTGGACCAAGACACAGGTGGCATTCTCACAACCATGTGCAATCATTCCTTCCATTGCTCATGTATTTCTAATTGGCCAGATTCTTCTTGCCCA

Basic information

species Arabidopsis thaliana
transcript AT2G26000.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G26000.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA15G00770.1 (Glycine max), 3'ss of exon 6
gtaaattcttaacctgaattattaaaatatatgcagaaatatggcttagtctagctctagaaagtgtaggcataggtattgatattaagattgacagtatct-ctggtgtcatatattgactatgtttggtcggtatattaatatatgctcatgtttcagAGAGATTGGACCAAGACACAGGTGGCATTCTCACAACCATGTGCAATCATTCCTTCCATTGCTCATGTATTTCTAATTGGCCAGATTCTTCTTGCCCA
                                                                                  ||     |||  |  |  || ||  | |   |||||  |||  ||| |    | ||| |||  ||     | || ||||| |||| || || ||||| ||||| ||||| ||||| || ||||| ||||| |||||||| || ||||||||||| ||| ||||||||||||| || 
---------------------------------------------------------------------------------gtacatccatttgccttgcctactactattcaatattc-ctacattttgattatttatgaatgaat-----tattgcagAGCGATTAGATCAGGACACCGGTGGAATTCTTACAACTATATGCAACCATTCTTTCCATTGTTCCTGTATTTCTAAATGGGCAGATTCTTCTTGTCCT

upper sequence: AT2G26000.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: Vv00s0125g00250.t01 (Vitis vinifera), 3'ss of exon 4
gtaaattcttaacctgaattattaaaatatatgcagaaatatggcttagtctagctctagaaagtgtaggcataggtattgatattaagattgacagtatctctggtgtcatatattgactatgtttggtcggtatattaatatatgctcatgtttcagAGAGATTGGACCAAGACACAGGTGGCATTCTCACAACCATGTGCAATCATTCCTTCCATTGCTCATGTATTTCTAATTGGCCAGATTCTTCTTGCCCA
                                                       |   |      |  |  |   |     |||||   |   ||  |  |      |    |||| |  || |  | |     ||||  | ||    ||| ||  ||| ||| | ||||||||||   |||| ||||| || || || ||||||||||||||||| ||||| ||||| || || ||| ||||||||||||| || 
-------------------------------------------------------tgatggtcccttttgtttcatttcccttattatactcatcaaaaaat--aaacttgcttatttaggatttgagctgatcttatt--tgtaccaacatattgtagAAAGACTAGACCAAGACATCAGTGGGATTCTTACTACTATATGCAATCATTCCTTCCACTGCTCTTGTATATCAAAATGGACAGATTCTTCTTGTCCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtgtcatatattgactatgtttggtcggtatattaatatatgctcatgtttcagAGAGATTGGACCAAGACACAGGTGGCATTCTCACAACCATGTGCAATCATTCCTTCCATTGCTCATGTATTTCTAATTGGCCAGATTCTTCTTGCCCA
                               tattaat  putative branch site (score: 2)
                             tatattaatatatgct  TA-rich tract