1 5' 3' |
AGTCTCTGCTGGTACTGGAGCAACCACCACAGGGCAGCAACACCATGGGTCGCTTGAAGAGCATCTTCGTCGGTCTGGAAGTTCATCTAGCTCTAGCTCGgtgagattcttttcttttcaaataaaaaactagatataagttgtagtagttaacactttcccgcactctcatatttacaactatatagatacaatgaaaa...
species | Arabidopsis thaliana |
transcript | AT2G21490.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGTCGGTCTGGAAGTTCATCTAGCTCTAGCTCG GAGGATGATGGGCAAGGAGGGAGGAGGAAGAAGAGCEST: gi|152034221|gb|BP822349.2|BP822349
genomic: CGTCGGTCTGGAAGTTCATCTAGCTCTAGCTCGgtgagattct ... gttgaaatagGAGGATGATGGGCAAGGAGGGAGGAGGAAGAAGAGC
EST: GCATCTTCGCTCGGTCTGGAAGTTCATCTAGCTCTAGCTCG GAGGATGATGGGCAAGGAGGGAGGAGGAAGAAGAGCATAAAGGAGAAAATT
genomic: GCATCTTCG-TCGGTCTGGAAGTTCATCTAGCTCTAGCTCGgtgagattct ... gttgaaatagGAGGATGATGGGCAAGGAGGGAGGAGGAAGAAGAGCATAAAGGAGAAAATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTCTCTGCTGGTACTGGAGCAACCACCACAGGGCAGCAACACCATGGGTCGCTTGAAGAGCATCTTCGTCGGTCTGGAAGTTCATCTAGCTCTAGCTCGgtgagattcttttcttttcaaataaaaaactagatataagttgtagtagttaacactttcccgcactctcatatttacaactatatagatacaatgaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaactaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cactttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgcactct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caatgaaa