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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGATTCCGACTAAGAAGATTGGGCAGAAAGTGAATCTTGAGGTTGATATCATGGGGAAGTATGTTGAGAGGCTTCTCACCAGTGGTGGCTTCTCCAAAGgtaactaggaaacttaaagtttaagtctttttggtaggattgatttggaggagaatgaatggtgttgattgctatcgatcttctaagtcctgagcttaaa...

Basic information

species Arabidopsis thaliana
transcript AT2G20690.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124846792|gb|EH931229.1|EH931229
EST:     CATGGGGAAGTATGTTGAGAGGCTTCTCACCAGTGGTGGCTTCTCCAAAG                         GAAAAGAAAATATTTGATTTGATGGGACTTGGGAG
genomic: CATGGGGAAGTATGTTGAGAGGCTTCTCACCAGTGGTGGCTTCTCCAAAGgtaactagga ... tgggttgcagGAAAAGAAAATATTTGATTTGATGGGACTTGGGAG
EST: gi|86074289|gb|DR370046.1|DR370046
EST:     CATGGGGAAGTATGTTGAGAGGCTTCTCACCAGTGGTGGCTTCTCCAAAG                         GAAAAGAAAATATTTGATTTGATGGGACTTGGGAGTGGGAGCTTTGTTGAG
genomic: CATGGGGAAGTATGTTGAGAGGCTTCTCACCAGTGGTGGCTTCTCCAAAGgtaactagga ... tgggttgcagGAAAAGAAAATATTTGATTTGATGGGACTTGGGAGTGGGAGCTTTGTTGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGATTCCGACTAAGAAGATTGGGCAGAAAGTGAATCTTGAGGTTGATATCATGGGGAAGTATGTTGAGAGGCTTCTCACCAGTGGTGGCTTCTCCAAAGgtaactaggaaacttaaagtttaagtctttttggtaggattgatttggaggagaatgaatggtgttgattgctatcgatcttctaagtcctgagcttaaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacttaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaatgaa