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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCTGGGAAGACGACGATTGTTCTGAAAATAAACGGAGAAGACACAAGTGTGATTAGTCCAACTCTTGGATTCAACATCAAAACCATTATCTACCAAAAgtaaagctctatttctctgctcttgtagtttcgtgttcttcagagttggtttaggaatttcatcgaacatgttataggcaatgatgagtttgtggtgaataatgtgtgtgtag

Basic information

species Arabidopsis thaliana
transcript AT2G18390.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G18390.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA11G07330.1 (Glycine max), 5'ss of exon 2
ATTCTGGGAAGACGACGATTGTTCTGAAAATAAACGGAGAAGACACAAGTGTGATTAGTCCAACTCTTGGATTCAACATCAAAACCATTATCTACCAAAAgtaaagctctatttctctgctcttgtagtttcgtgttcttcagagttggtttaggaatttcatcga--acatgttataggcaatgatgagtttgtggtgaataatgtgtgtgtag
|||||||||| || || || ||||| || ||||||||||| |||||||| || || ||||| || || || ||||||||||||||||| |  ||||||||||||  |||  |||       |   |    | |  |    |  |||| | ||   | |||  | ||     | |  | | || || |                            
ATTCTGGGAAAACCACAATCGTTCTAAAGATAAACGGAGAGGACACAAGCGTCATCAGTCCCACGCTCGGCTTCAACATCAAAACCATAACTTACCAAAAgtaattctcacttttcacaacccaatcacatagcttgaaact-agtttgcttgttattttacttgatggtttctctttgacattgttag--------------------------

upper sequence: AT2G18390.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA01G38270.1 (Glycine max), 5'ss of exon 2
ATTCTGGGAAGACGACGATTGTTCTGAAAATAAACGGAGAAGACACAAGTGTGATTAGTCCAACTCTTGGATTCAACATCAAAACCATTATCTACCAAAAgtaaagctctatttctctgctcttgtagtttcgtgttcttcagagttggtttaggaatttcatcgaacatgttataggcaatgatgagtttgtggtgaataatgtgtgtgtag
|||||||||| || || || ||| | || ||||||||||| ||||| || || || ||||| || || || ||||||||||||||||| |  ||||||||||||   ||  |||           |    |  |  |    |   ||   |  | | | | |    |  || |       ||  | ||                         
ATTCTGGGAAAACCACAATCGTTTTAAAGATAAACGGAGAGGACACCAGCGTCATCAGTCCCACGCTCGGCTTCAACATCAAAACCATAACTTACCAAAAgtaattttcacttttcaccactcaatcacattataatagctatcattatgtgcgtagtgtgaaattatttgcttcttattattgttag-------------------------

upper sequence: AT2G18390.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv04s0023g01820.t01 (Vitis vinifera), 5'ss of exon 3
ATTCTGGGAAGACGACGATTGTTCTGAAAATAAACGGAGAAGACACAAGTGTGATTAGTCCAACTCTTGGATTCAACATCAAAACCATTATCTACCAAAAgtaaagctctatttctctgctcttgtagtttcgtgttcttcagagttggtttaggaatttcatcgaacatgttataggcaatgatgagtttgtggtgaataatgtgtgtgtag
|||| |||||||| || |||||  ||||||| || ||||| ||||| ||||| || ||||| || || || ||||| ||||||||||| | |||||| |||||||    |  ||||   || |  |    ||   |  ||     |||   |  |  |||  ||  | ||||  | || ||   |   | |||  | ||| |           
ATTCAGGGAAGACTACAATTGTGTTGAAAATCAATGGAGAGGACACTAGTGTTATCAGTCCCACCCTCGGCTTCAATATCAAAACCATCACCTACCACAAgtaaaagctttcttcttctctttcctcaagtccactaattactttttgcaatctgggttttgtcacaaatgtgttgggtaactttcgttctgt--ttaatta-----------

upper sequence: AT2G18390.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: PP1S62_133V6.2 (Physcomitrella patens), 5'ss of exon 2
ATTCTGGGAAGACGACGATTGTTCTGAAAATAAACGGAGAAGACACAAGTGTGATTAGTCCAACTCTTGGATTCAACATCAAAACCATTATCTACCAAAAgtaaagctctatttctctgctcttgtagtttcgtgttcttcagagttggtttaggaatttcatcgaacatgttataggcaatgatgagtttgtggtgaataatgtgtgtgtag
|| | || || || || |||||   |   || || |||||||| ||||||   ||||| || |||||||||||||| |||||||||||       ||  |  | || | | ||| || || |||      | |  | ||| ||||   | || |   |   | ||  |  ||| |    | |  |   |   || |    | ||   |||   
ATGCAGGAAAAACAACCATTGTGAAGCGGATTAATGGAGAAGATACAAGTAAAATTAGCCCTACTCTTGGATTCAATATCAAAACCATG------CAGTACAATAGgtttgtttgtcggccctttcg---ttgcttccttaagagc--gatttgttgtcctaacgtgccggttctcttgattattctctccttgatattcattgcaggtgg--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86075124|gb|DR370881.1|DR370881
EST:     ACTCTTGGATTCAACATCAAAACCATTATCTACCAAAA                         GTATACGCTAAATATATGGGATGTTGGTGGGCAAAAGACTATAAGATCGTA
genomic: ACTCTTGGATTCAACATCAAAACCATTATCTACCAAAAgtaaagctct ... gtgtgtgtagGTATACGCTAAATATATGGGATGTTGGTGGGCAAAAGACTATAAGATCGTA