Sequence
atgc intronic sequence ATGC exonic sequence...cttataatatttaacatttttgaattttgtctgtttaatttaaattctaaactttataaaagctgaaataaataatacattgttgattttgtttttgcagTGTTGGTTGAGAAATTCTCAACATTGATCAATGGTCCATCTTGTCCTAATTAAGTACGCAATTTATATCAATAAAGGCGCCGTATAATATATGTAGGCGA
Basic information
species | Arabidopsis thaliana |
transcript | AT2G18370.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86083340|gb|DR379099.1|DR379099EST: TGTGGTGCGAGCTTGCCCGTTGATGCTTCTCCTACTGTCGACTGCACTAC TGTTGGTTGAGAAATTCTCAACATTGATCAATGGTCCATCTTGTCCTAATT
genomic: TGTGGTGCGAGCTTGCCCGTTGATGCTTCTCCTACTGTCGACTGCACTACgtacgttttg ... gtttttgcagTGTTGGTTGAGAAATTCTCAACATTGATCAATGGTCCATCTTGTCCTAATT
EST:
gi|19798440|gb|AU229861.1|AU229861EST: TTTGGTGCGAGCTTGCCCCTTGATGCTTCTCCTACTGTCGACTGCACTAC TTTTGGTTGAGAAATTCTCAACATTGATCAATGGTCCATCTTGTCCTAATT
genomic: TGTGGTGCGAGCTTGCCCGTTGATGCTTCTCCTACTGTCGACTGCACTACgtacgttttg ... gtttttgcagTGTTGGTTGAGAAATTCTCAACATTGATCAATGGTCCATCTTGTCCTAATT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctaaactttataaaagctgaaataaataatacattgttgattttgtttttgcagTGTTGGTTGAGAAATTCTCAACATTGATCAATGGTCCATCTTGTCCTAATTAAGTACGCAATTTATATCAATAAAGGCGCCGTATAATATATGTAGGCGA
ttttgttttt CT-rich tract
aaataaataatacatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cttataatatttaacatttttgaattttgtctgtttaatttaaattctaaactttataaaagctgaaataaataatacattgttgattttgtttttgcagTGTTGGTTGAGAAATTCTCAACATTGATCAATGGTCCATCTTGTCCTAATTAAGTACGCAATTTATATCAATAAAGGCGCCGTATAATATATGTAGGCGA
- - - - - - - - - - - - - - - - - - - - - - - ctaaact
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ataaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataaa