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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTGAACTTATGGCATTGAAGCTAGGACTAACTGAAGCCGTGAGTTTGGGGATCACTCATATCTCAATCTACTGCGATCATTTTCAGATTTTTGAACTGgtaaattgttcttgaaatatttacacatttctttaggttttgattagttttgcatgccaaacttgttttttaaaataaatttaacattttaaccaaaacaaaaatttatgatgacgagaaaaatctcctaattgagtaggttttgtccttatcatctttttag

Basic information

species Arabidopsis thaliana
transcript AT2G16520.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116380054|gb|EG422646.1|EG422646
EST:     GGATCACTCATATCTCAATCTACTGCGATCATTTTCAGATTTTTGAACTG                         GTTATGTGGAGATCAGTGCCTGATAAAGATAGCATTGCAATGATAATGTAT
genomic: GGATCACTCATATCTCAATCTACTGCGATCATTTTCAGATTTTTGAACTGgtaaattgtt ... atctttttagGTTATGTGGAGATCAGTGCCTGATAAAGATAGCATTGCAATGATAATGTAT
EST: gi|116380047|gb|EG422639.1|EG422639
EST:     GGATCACTCATATCTCAACCTACTGCGATCATTTTCAGATTTTTGAACTG                         GTTATGTGGAGATCAGTGCCTGATAAAGATAGCATTGCAATGATAATGTAT
genomic: GGATCACTCATATCTCAATCTACTGCGATCATTTTCAGATTTTTGAACTGgtaaattgtt ... atctttttagGTTATGTGGAGATCAGTGCCTGATAAAGATAGCATTGCAATGATAATGTAT
EST: gi|116380044|gb|EG422636.1|EG422636
EST:     GGATCACTCATATCTCAATCTACTGCGATCATTTTCAGATTTTTGAACTG                         GTTATGTGGAGATCAGTGCCTGATAAAGATAGCATTGCAATGATAATGTAT
genomic: GGATCACTCATATCTCAATCTACTGCGATCATTTTCAGATTTTTGAACTGgtaaattgtt ... atctttttagGTTATGTGGAGATCAGTGCCTGATAAAGATAGCATTGCAATGATAATGTAT
EST: gi|116380049|gb|EG422641.1|EG422641
EST:     GGATCACTCGTATCTCAATCTACTGCGATCATTTTCAGATTTTTGAACTG                         GTTATGTGGAGATCAGTGCCTGATAAAGATAGCATTGCAATGATAATGTAT
genomic: GGATCACTCATATCTCAATCTACTGCGATCATTTTCAGATTTTTGAACTGgtaaattgtt ... atctttttagGTTATGTGGAGATCAGTGCCTGATAAAGATAGCATTGCAATGATAATGTAT
EST: gi|116380059|gb|EG422651.1|EG422651
EST:     GGATCACTCATATCTCAATCTACTGCGATCATTTTCAGATTTTTGAACTG                         GTTATGTGGAGATCAGTGCCTGATAAAGATAGCATTGCAATGATAATGTAT
genomic: GGATCACTCATATCTCAATCTACTGCGATCATTTTCAGATTTTTGAACTGgtaaattgtt ... atctttttagGTTATGTGGAGATCAGTGCCTGATAAAGATAGCATTGCAATGATAATGTAT
EST: gi|116380014|gb|EG422606.1|EG422606
EST:     GGATCACTCATATCTCAATCTACTGCGATCATTTTCAGATTTTTGAACTG                         GTTATGTGGAGATCAGTGCCTGATAAAGATAGCATTGCAATGATAATGTAT
genomic: GGATCACTCATATCTCAATCTACTGCGATCATTTTCAGATTTTTGAACTGgtaaattgtt ... atctttttagGTTATGTGGAGATCAGTGCCTGATAAAGATAGCATTGCAATGATAATGTAT
EST: gi|116380022|gb|EG422614.1|EG422614
EST:     GGATCACTCATATCTCAATCTACTGCGATCATTTTCAGATTTTTGAACTG                         GTTATGTGGAGATCAGTGCCTGATAAAGATAGTATTGCAATGATAATGTAT
genomic: GGATCACTCATATCTCAATCTACTGCGATCATTTTCAGATTTTTGAACTGgtaaattgtt ... atctttttagGTTATGTGGAGATCAGTGCCTGATAAAGATAGCATTGCAATGATAATGTAT
EST: gi|116380052|gb|EG422644.1|EG422644
EST:     GGATCACTCGTATCTCAATCTACTGCGATCATTTTCAGATTTTTGAACTG                         GTTATGTGGAGATCAGTGCCTGATAAAGATAGCATTGCAATGATAATGTAT
genomic: GGATCACTCATATCTCAATCTACTGCGATCATTTTCAGATTTTTGAACTGgtaaattgtt ... atctttttagGTTATGTGGAGATCAGTGCCTGATAAAGATAGCATTGCAATGATAATGTAT
EST: gi|116380055|gb|EG422647.1|EG422647
EST:     GGATCACTCATATCTCAATCTACTGCGATCATTTTCAGATTTTTGAACTG                         GTTATGTGGAGATCAGTGCCTGATAAAGATAGCATTGCAATGATAATGTAT
genomic: GGATCACTCATATCTCAATCTACTGCGATCATTTTCAGATTTTTGAACTGgtaaattgtt ... atctttttagGTTATGTGGAGATCAGTGCCTGATAAAGATAGCATTGCAATGATAATGTAT
EST: gi|116379988|gb|EG422580.1|EG422580
EST:     GGATCACTCATATCTCAATCTACTGCGATCATTTTCAGATTTTTGAACTG                         GTTATGTGGAGATCAGTGCCTGATAAAGATAGCATTGCAATGATAATGTAT
genomic: GGATCACTCATATCTCAATCTACTGCGATCATTTTCAGATTTTTGAACTGgtaaattgtt ... atctttttagGTTATGTGGAGATCAGTGCCTGATAAAGATAGCATTGCAATGATAATGTAT
EST: gi|116380012|gb|EG422604.1|EG422604
EST:     GGATCACTCATATCTCAATCTACTGCGATCATTTTCAGATTTTTGAACTG                         GTTATGTGGAGATCAGTGCCTGATAAAGATAGCATTGCAATGATAATGTAT
genomic: GGATCACTCATATCTCAATCTACTGCGATCATTTTCAGATTTTTGAACTGgtaaattgtt ... atctttttagGTTATGTGGAGATCAGTGCCTGATAAAGATAGCATTGCAATGATAATGTAT
EST: gi|116380013|gb|EG422605.1|EG422605
EST:     GGATCACTCATATCTCAATCTACTGCGATCATTTTCAGATTTTTGAACTG                         GTTATGTGGAGATCAGTGCCTGATAAAGATAGCATTGCAATGATAATGTAT
genomic: GGATCACTCATATCTCAATCTACTGCGATCATTTTCAGATTTTTGAACTGgtaaattgtt ... atctttttagGTTATGTGGAGATCAGTGCCTGATAAAGATAGCATTGCAATGATAATGTAT