Sequence
atgc intronic sequence ATGC exonic sequencegtaagtcccttttcatcattgtagtgattatttgttctttatgaattgattggaattgctaagcttagatattacacaatgctaaacaaaatttgacatctttagatgccctttgcatgagtcttccttttggtagttctgtggcttttttttctgcagtttcttagactgttattgttttggtttcagGGGAATTATCATTGCGAAACTACGCAGGGGACAAGAGTTGAAGCTTAAAGCATTAGCTAGGAAAGGAATTGGGAAAGATCATGCGAAATGGTCTCCTGCA
Basic information
species | Arabidopsis thaliana |
transcript | AT2G15400.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19875527|gb|AU236358.1|AU236358EST: CCTGTTGATTTCACTAGTAACTCATCTACTTNTGATTCAAGCGAGCACAA GGGAATTATCATTGCNAAACTAC
genomic: CCTGTTGATTTCACTAGTAACTCATCTACTTCTGATTCAAGCGAGCACAAgtaagtccct ... ttggtttcagGGGAATTATCATTGCGAAACTAC
EST:
gi|86079184|gb|DR374941.1|DR374941EST: CCTGTTGATTTCACTAGTAACTCATCTACTTCTGATTCAAGCGAGCACAA GGGAATTATCATTGCGAAACTACGCAGGGGACAAGAGTTGAAGCTTAAAGC
genomic: CCTGTTGATTTCACTAGTAACTCATCTACTTCTGATTCAAGCGAGCACAAgtaagtccct ... ttggtttcagGGGAATTATCATTGCGAAACTACGCAGGGGACAAGAGTTGAAGCTTAAAGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agttctgtggcttttttttctgcagtttcttagactgttattgttttggtttcagGGGAATTATCATTGCGAAACTACGCAGGGGACAAGAGTTGAAGCTTAAAGCATTAGCTAGGAAAGGAATTGGGAAAGATCATGCGAAATGGTCTCCTGCA
ttgtttt CT-rich tract
ttttttttct TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtcccttttcatcattgtagtgattatttgttctttatgaattgattggaattgctaagcttagatattacacaatgctaaacaaaatttgacatctttagatgccctttgcatgagtcttccttttggtagttctgtggcttttttttctgcagtttcttagactgttattgttttggtttcagGGGAATTATCATTGCGAAACTACGCAGGGGACAAGAGTTGAAGCTTAAAGCATTAGCTAGGAAAGGAATTGGGAAAGATCATGCGAAATGGTCTCCTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA