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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCTAGATGTTACTAGTAGGGATCTCTACAGTGCTGATCCTACTGTTACTCCTGTTGATTTCACTAGTAACTCATCTACTTCTGATTCAAGCGAGCACAAgtaagtcccttttcatcattgtagtgattatttgttctttatgaattgattggaattgctaagcttagatattacacaatgctaaacaaaatttgacatctttagatgccctttgcatgagtcttccttttggtagttctgtggcttttttttctgcagtttcttagactgttattgttttggtttcag

Basic information

species Arabidopsis thaliana
transcript AT2G15400.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G15400.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA20G02360.1 (Glycine max), 5'ss of exon 1
CCCTAGATGTTACTAGTAGGGATCTCTACAGTGCTGATCCTACTGTTACTCCTGTTGATTTCACTAGTAACTCATCTACTTCTGATTCAAGCGAGCACAAgtaagtcccttt--tcatcattgtagtgattatttgttctttatgaattgattggaattgctaagcttagatattacacaatgctaaacaaa-atttgacatctttagatgccctttgcatgagtcttccttttggtagttctgtggcttttttttctgcagtttcttagactgttattgttttggtttcag
|||| |||||||| || | ||||||||||||| |||| |||||||| | ||| ||||||||| ||     |||  | |||       ||  | |  ||| ||  ||  |||    | |  || ||  ||  |  |  | |||               ||  |||   | | | ||   | ||   || |    |||||   | || | |||     |                                                                           
CCCTCGATGTTACGAGCAAGGATCTCTACAGTTCTGACCCTACTGTGAGTCCCGTTGATTTCTCTGACCCCTCTGCCACTGACTCCCCAGACAACAACAGgtgcgtttcttcaaccttttttttaaggaaaacctacttttt---------------tttttaaa--tgggtttttgtcgatttcaaccgggtatttggttttttcaaatgggtcgt---------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19875527|gb|AU236358.1|AU236358
EST:     CCTGTTGATTTCACTAGTAACTCATCTACTTNTGATTCAAGCGAGCACAA                         GGGAATTATCATTGCNAAACTAC
genomic: CCTGTTGATTTCACTAGTAACTCATCTACTTCTGATTCAAGCGAGCACAAgtaagtccct ... ttggtttcagGGGAATTATCATTGCGAAACTAC