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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcaaatcttcacgaacacatatgtatataaattcaatccaagaaactaggagaaatctatgaaagaggacaaatctaagtcaagtttgaatcaggaagattatctagatttgatcattttgacatttacgatgtgcttacttattcttgataaactttgatgcagTTGGTTTTGGTGTTAGTCTTTTGGGGAGAGAGATGGGGAGAGGGAAGATAGTTATACGAAGGATCGATAACTCTACAAGTAGACAAGTGACTTTCTCCAA

Basic information

species Arabidopsis thaliana
transcript AT2G14210.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19875302|gb|AU236133.1|AU236133
EST:     TCTCCTCTTCCTCTGCCTTCTTCTTTCCATTTATTGCAAACCCTGATCAA                         TTGGTTTTGGTGTTAGTCTTTTGGGGAGAGAGATGGGGAGAGGGAAGATAG
genomic: TCTCCTCTTCCTCTGCCTTCTTCTTTCCATTTATTGCAAACCCTGATCAAgtaagtcaaa ... tttgatgcagTTGGTTTTGGTGTTAGTCTTTTGGGGAGAGAGATGGGGAGAGGGAAGATAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatcattttgacatttacgatgtgcttacttattcttgataaactttgatgcagTTGGTTTTGGTGTTAGTCTTTTGGGGAGAGAGATGGGGAGAGGGAAGATAGTTATACGAAGGATCGATAACTCTACAAGTAGACAAGTGACTTTCTCCAA
                              ttattcttgataaa  TA-rich tract