1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaataactctaacgttccattacatttaattttcaagtgcttatgtattttaaaattttgaattttatttttgtttagATTGACACTGAATCTTCCGAGGCGGCTAACTATGAAAACAGCAACTCGTCTATCAAGACTTCTAAGAACACTTCAAAGATCACTAAATTGACTCCAACGT
species | Arabidopsis thaliana |
transcript | AT2G05642.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ATTCAGACATGAACATTGTCTCTACCCCTTCAAATGCAACTACAAATCAG ATTGACACTGAATCTTCCGAGGCGGCTAACTATGAAAACAGCAACTCGTCTEST: gi|116380288|gb|EG422880.1|EG422880
genomic: ATTCAGACATGAACATTGTCTCTACCCCTTCAAATGCAACTACAAATCAGgtaataactc ... ttttgtttagATTGACACTGAATCTTCCGAGGCGGCTAACTATGAAAACAGCAACTCGTCT
EST: ATTCAGACATGAACATTGTCTCTACCCCTTCAAATGCAACTACAAATCAG ATTGACACTGAATCTTCCGAGGCGGCTAACTATGAAAACAGCAACTCGTCT
genomic: ATTCAGACATGAACATTGTCTCTACCCCTTCAAATGCAACTACAAATCAGgtaataactc ... ttttgtttagATTGACACTGAATCTTCCGAGGCGGCTAACTATGAAAACAGCAACTCGTCT
atttaattttcaagtgcttatgtattttaaaattttgaattttatttttgtttagATTGACACTGAATCTTCCGAGGCGGCTAACTATGAAAACAGCAACTCGTCTATCAAGACTTCTAAGAACACTTCAAAGATCACTAAATTGACTCCAACGT
atttaat putative branch site (score: 4)
ttttatttttgttt putative PPT
ttatgtattttaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaataactctaacgttccattacatttaattttcaagtgcttatgtattttaaaattttgaattttatttttgtttagATTGACACTGAATCTTCCGAGGCGGCTAACTATGAAAACAGCAACTCGTCTATCAAGACTTCTAAGAACACTTCAAAGATCACTAAATTGACTCCAACGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA