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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTTGCTGCAGATGAAGGTGTGGAAGGAGCCATTCCAGCGCTGCTACATAGAGCAATGGGTCAAACACTATCAGTTGTGCAGGACTATTTCAATGACAAGgtagttagctcattttccatacatttctcctccagtggcccctttaggttctatgtgttgaattctcaagtgacagtaatatcttggttttttccag

Basic information

species Arabidopsis thaliana
transcript AT2G04270.4
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G04270.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv12s0057g01320.t01 (Vitis vinifera), 5'ss of exon 6
CCTTGCTGCAGATGAAGGTGTGGAAGGAGCCATTCCAGCGCTGCTACATAGAGCAATGGGTCAAACACTATCAGTTGTGCAGGACTATTTCAATGACAAGgtagttagctcattttccatacatttctcctc---cagtggcccctttaggttctatgtgttgaattctcaagtgacagtaata-tcttggttttttccag--------------
 ||||| |||||||||||||||||||| || || || |   |  | ||||| |||||||||||||| || || ||||| ||||| ||||||||||| |||||    | |||||| |  | |  ||  | | |   |  |    | | || |   | ||  ||||| ||   |   |   || |  |||    || | | |               
TCTTGCAGCAGATGAAGGTGTGGAAGGGGCAATCCCTGTTATTTTGCATAGGGCAATGGGTCAAACTCTCTCCGTTGTCCAGGATTATTTCAATGAGAAGgtg---aactcattctatacattttaattcccagtctttcattcatctatggcatttgaattgaagtcctcatacaatctattgctctccaattgtgctatgtggctgttttcag