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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTTCTTGATGAACTAGCCACAAACATCAGCACCCTTAATCTAGAACACGTGCGCAGGCTAAAAGGTCGTCTTCTTACCTTAACACAGAAAGTTCAGAAGgtgaacacaaaagactcttcaaatttgaaaaagccctactaccataatttgattttggaggtcaaaacttgcag

Basic information

species Arabidopsis thaliana
transcript AT2G03620.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116400882|gb|EG443474.1|EG443474
EST:     TGCGCAGGCTAAAAGGTCGTCTTCTTACCTTAACACAGAAAGTTCAGAAG                         GTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAG
genomic: TGCGCAGGCTAAAAGGTCGTCTTCTTACCTTAACACAGAAAGTTCAGAAGgtgaacacaa ... aaacttgcagGTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAG
EST: gi|116398147|gb|EG440739.1|EG440739
EST:     TGCGCAGGCTAAAAGGTCGTCTTCTTACCTTAACACAGAAAGTTCAGAAG                         GTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAG
genomic: TGCGCAGGCTAAAAGGTCGTCTTCTTACCTTAACACAGAAAGTTCAGAAGgtgaacacaa ... aaacttgcagGTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAG
EST: gi|116398342|gb|EG440934.1|EG440934
EST:     TGCGCAGGCTAAAAGGTCGTCTTCTTACCTTAACACAGAAAGTTCAGAAG                         GTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAG
genomic: TGCGCAGGCTAAAAGGTCGTCTTCTTACCTTAACACAGAAAGTTCAGAAGgtgaacacaa ... aaacttgcagGTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAG
EST: gi|116398341|gb|EG440933.1|EG440933
EST:     TGCGCAGGCTAAAAGGTCGTCTTCTTACCTTAACACAGAAAGTTCAGAAG                         GTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAG
genomic: TGCGCAGGCTAAAAGGTCGTCTTCTTACCTTAACACAGAAAGTTCAGAAGgtgaacacaa ... aaacttgcagGTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAG
EST: gi|116398297|gb|EG440889.1|EG440889
EST:     TGCGCAGGCTAAAAGGTCGTCTTCTTACCTTAACACAGAAAGTTCAGAAG                         GTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAG
genomic: TGCGCAGGCTAAAAGGTCGTCTTCTTACCTTAACACAGAAAGTTCAGAAGgtgaacacaa ... aaacttgcagGTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAG
EST: gi|116398331|gb|EG440923.1|EG440923
EST:     TGCGCAGGCTAAAAGGTCGTCTTCTTACCTTAACACAGAAAGTTCAGAAG                         GTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAG
genomic: TGCGCAGGCTAAAAGGTCGTCTTCTTACCTTAACACAGAAAGTTCAGAAGgtgaacacaa ... aaacttgcagGTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAG
EST: gi|116400885|gb|EG443477.1|EG443477
EST:     TGCGCAGGCTAAAAGGTCGTCTTCTTACCTTAACACAGAAAGTTCAGAAG                         GTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAG
genomic: TGCGCAGGCTAAAAGGTCGTCTTCTTACCTTAACACAGAAAGTTCAGAAGgtgaacacaa ... aaacttgcagGTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAG
EST: gi|116398334|gb|EG440926.1|EG440926
EST:     CGTCTTCTTACCTTAACACAGAAAGTTCAGAAG                         GTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAG
genomic: CGTCTTCTTACCTTAACACAGAAAGTTCAGAAGgtgaacacaa ... aaacttgcagGTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAG
EST: gi|116398523|gb|EG441115.1|EG441115
EST:     TGCGCAGGCTAAAAGGTCGTCTTCTTACCTTAACACAGAAAGTTCAGAAG                         GTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAG
genomic: TGCGCAGGCTAAAAGGTCGTCTTCTTACCTTAACACAGAAAGTTCAGAAGgtgaacacaa ... aaacttgcagGTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAG
EST: gi|116400881|gb|EG443473.1|EG443473
EST:     TGCGCAGGCTAAAAGGTCGTCTTCTTACCTTAACACAGAAAGTTCAGAAG                         GTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAG
genomic: TGCGCAGGCTAAAAGGTCGTCTTCTTACCTTAACACAGAAAGTTCAGAAGgtgaacacaa ... aaacttgcagGTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAG
EST: gi|116400870|gb|EG443462.1|EG443462
EST:     GCGCAGGCTAAAAAGTCGTCTTCTTACCCTTA-CACAGAAAGTTCAGAAG                         GTTTGTGATGAAATAGA
genomic: GCGCAGGCTAAAAGGTCGTCTTCTTACC-TTAACACAGAAAGTTCAGAAGgtgaacacaa ... aaacttgcagGTTTGTGATGAAATAGA
EST: gi|116398300|gb|EG440892.1|EG440892
EST:     GCGCCAGGCTAAAAGGTCGTCTTCTTACCTTAACACAGAAAGTTCAGAAG                         GTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAG
genomic: GCG-CAGGCTAAAAGGTCGTCTTCTTACCTTAACACAGAAAGTTCAGAAGgtgaacacaa ... aaacttgcagGTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAG
EST: gi|116398332|gb|EG440924.1|EG440924
EST:     TGCGCAGGCTAAAAGGTCGTCTTCTTACCTTAACACAGAAAGTTCAGAAG                         GTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAG
genomic: TGCGCAGGCTAAAAGGTCGTCTTCTTACCTTAACACAGAAAGTTCAGAAGgtgaacacaa ... aaacttgcagGTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAG
EST: gi|116400869|gb|EG443461.1|EG443461
EST:     TGCGCAGGCTAAAAGGTCGTCTTCTTACCTTAACACAGAAAGTTCAGAAG                         GTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAG
genomic: TGCGCAGGCTAAAAGGTCGTCTTCTTACCTTAACACAGAAAGTTCAGAAGgtgaacacaa ... aaacttgcagGTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAG
EST: gi|116400874|gb|EG443466.1|EG443466
EST:     TGCGCAGGCTAAAAGGTCGTCTTCTTACCTTAACACAGAAAGTTCAGAAG                         GTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAG
genomic: TGCGCAGGCTAAAAGGTCGTCTTCTTACCTTAACACAGAAAGTTCAGAAGgtgaacacaa ... aaacttgcagGTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAG