Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116381234|gb|EG423826.1|EG423826EST: CTCCTCCGTCTTCGATCGTCAATTGTTTCGTTCGTTAAGTTTCTCTCAAG TTTCCTCTGTAGGTACGTTACAACAAAGATGGGAATCAAGAAGAACAAAGC
genomic: CTCCTCCGTCTTCGATCGTCAATTGTTTCGTTCGTTAAGTTTCTCTCAAGgtatgtatat ... ttgaaaaaagTTTCCTCTGTAGGTACGTTACAACAAAGATGGGAATCAAGAAGAACAAAGC
EST:
gi|116381230|gb|EG423822.1|EG423822EST: CTCCTCCGTCTTCGATCGTCAATTGTTTCGTTCGTTAAGTTTCTCTC-A- ----------AGGTACGTTACAACAAAGATGGGAATCAAGAAGAACAAAGC
genomic: CTCCTCCGTCTTCGATCGTCAATTGTTTCGTTCGTTAAGTTTCTCTCAAGgtatgtatat ... ttgaaaaaagTTTCCTCTGTAGGTACGTTACAACAAAGATGGGAATCAAGAAGAACAAAGC
EST:
gi|116381232|gb|EG423824.1|EG423824EST: CTCCTCCGTCTTCGATCGTCAATTGTTTCGTTCGTTAAGTTTCTCTCAAG TTTCCTCTGTAGGTACGTTACAACAAAGATGGGAATCAAGAAGAACAAAGC
genomic: CTCCTCCGTCTTCGATCGTCAATTGTTTCGTTCGTTAAGTTTCTCTCAAGgtatgtatat ... ttgaaaaaagTTTCCTCTGTAGGTACGTTACAACAAAGATGGGAATCAAGAAGAACAAAGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAGAGTTATTCGGTGGCGTTGGTGATCGTTATGGTTATATATGTTGCTTTCTCCTCCGTCTTCGATCGTCAATTGTTTCGTTCGTTAAGTTTCTCTCAAGgtatgtatatatcaaattacctcttcgattcaaccatataaatcttaaacttcttggttgagtcgtaggctacgatcaaacacttttacttttatattac
- - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC