Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAGTATCGCCACAGTGAGTATGCGCGTATGAACCCGAGGGATTGCTATTATTGGTTGAATGGAAACTGTTTGAATCCCAAATGTGGATTTCGGCATCCTgtgagtttactttcttcctcaatagatagtctctgcttgagcttcttgagttgtattatcaaagtgtgcttatgtttgtggttttgttttcttacag

Basic information

species Arabidopsis thaliana
transcript AT2G02160.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G02160.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA05G26620.1 (Glycine max), 5'ss of exon 2
CGAGTATCGCCACAGTGAGTATGCGCGTATGAACCCGAGGGATTGCTATTATTGGTTGAATGGAAACTGTTTGAATCCCAAATGTGGATTTCGGCATCCTgtgagtttactttcttcctcaatagatagtctctgcttgagcttcttgagttgtattatcaaagtgtgcttatgtttgtggttttgttttcttacag---------------------------------
|||||| |||||||| |||||||| ||| | || || ||||| ||    |||||||||| ||| || || |||||||||||||||  |||||| ||||| |||||| |  ||     | | |   ||  | | | |||     ||     ||| | |||    || |  ||   | |||  || | | ||  ||| |                                 
CGAGTACCGCCACAGCGAGTATGCACGTGTTAATCCTAGGGACTGTCGGTATTGGTTGAGTGGCAATTGCTTGAATCCCAAATGTCCATTTCGTCATCCGgtgagtgtctttatgagcacca---attttttatactttcatgtcaatttttggactattt--gtctattttcctctgttattctttctttgtacggcttttgctaacagcattttgtttttgcatgcag

upper sequence: AT2G02160.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA08G09630.1 (Glycine max), 5'ss of exon 2
CGAGTATCGCCACAGTGAGTATGCGCGTATGAACCCGAGGGATTGCTATTATTGGTTGAATGGAAACTGTTTGAATCCCAAATGTGGATTTCGGCATCCTgtgagtttactttcttc--ctcaatagatagtctctgcttga-gcttcttgagttgtattatcaaagtgtgcttatgtttgtggttt------tgttttcttacag--------------------
 ||||| ||||| ||||||||||| ||| | || || ||||| ||    |||||||||| ||| || || |||||||||||||||  |||||| ||||| ||||||    |||      |  | |  |||  || | | ||    || |||   | | || | | | | | ||  | || ||  |||        ||| || ||||                    
TGAGTACCGCCATAGTGAGTATGCACGTGTTAATCCTAGGGACTGTCGGTATTGGTTGAGTGGCAATTGCTTGAATCCCAAATGTCCATTTCGACATCCGgtgagtgcctttttgagaaccaattttatatacttttcatgccaatttttggactattttgt-atattttcctgttattcgttctttgtacggcttttgctaacagcattttgtttttgcatgcag

upper sequence: AT2G02160.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv01s0010g01770.t01 (Vitis vinifera), 5'ss of exon 2
CGAGTATCGCCACAGTGAGTATGCGCGTATGAACCCGAGGGATTGCTATTATTGGTTGAATGGAAACTGTTTGAATCCCAAATGTGGATTTCGGCATCCTgtgagtttactttcttcctcaatagatagtctctgcttgagcttcttgagttgtattatcaaagtgtgcttatgtttgtggttttgttttcttacag--------------------------------------------------------------------------------------------
 ||||||||||| |||||  |||| || |||||||| ||||||||||  |  ||||||||||| || || |||||||| || |||   || |||||||| || ||  | || |  || |      |   |   ||  ||   |   | || | | |     || | |   ||  | ||  |    | |     | |                                                                                             
TGAGTATCGCCATAGTGAACATGCCCGGATGAACCCTAGGGATTGCTGGTTCTGGTTGAATGGTAATTGCTTGAATCCAAAGTGTTCGTTCCGGCATCCGgtaagcatcctcttgtcttgctggaactatgaatgtctgttttatattagatctgtctgtgaaat-tctctaaatatgaagcaaagatgatggaaattgaaaatagcatgtcttaatttatattttcatattgttctaatttgttgtcttagaattttttattattaaatgcctttcttctcttttcag