1 5' 3' | 2 5' 3' | 3 5' 3' |
...ctcacggaataaatatagtataaagttttcatatatatgaattaataactttattatcgaccgttgtgttatttacatttctttttgttttgctttgtagACGTGATAGTTACATCACGCATAGGGCTTTCTGCGATGCATTGATACAAGAGACTGCAAGAAACCCTACCGTGAGCTTTACGTCAATGACAGCTGCTAGT
species | Arabidopsis thaliana |
transcript | AT2G02080.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACTTGTGGTACTAAAGAGTATCGATGTGACTGTGGTACCATCTTCTCTAG ACGTGATAGTTACATCACGCATAGGGCTTTCTGCGATGCATTGATACAAGAEST: gi|116482430|gb|EG525022.1|EG525022
genomic: ACTTGTGGTACTAAAGAGTATCGATGTGACTGTGGTACCATCTTCTCTAGgtaactaatc ... tgctttgtagACGTGATAGTTACATCACGCATAGGGCTTTCTGCGATGCATTGATACAAGA
EST: ACTTGTGGTACTAAAGAGTATCGATGTGACTGTGGTACCATCTTCTCTAG ACGTGATAGTTACATCACGCATAGGGCTTTCTGCGATGCATTGATACAAGAEST: gi|116486112|gb|EG528704.1|EG528704
genomic: ACTTGTGGTACTAAAGAGTATCGATGTGACTGTGGTACCATCTTCTCTAGgtaactaatc ... tgctttgtagACGTGATAGTTACATCACGCATAGGGCTTTCTGCGATGCATTGATACAAGA
EST: ACTTGTGGTACTAAAGAGTATCGATGTGACTGTGGTACCATCTTCTCTAG ACGTGATAGTTACATCACGCATAGGGCTTTCTGCGATGCATTGATACAAGA
genomic: ACTTGTGGTACTAAAGAGTATCGATGTGACTGTGGTACCATCTTCTCTAGgtaactaatc ... tgctttgtagACGTGATAGTTACATCACGCATAGGGCTTTCTGCGATGCATTGATACAAGA
taactttattatcgaccgttgtgttatttacatttctttttgttttgctttgtagACGTGATAGTTACATCACGCATAGGGCTTTCTGCGATGCATTGATACAAGAGACTGCAAGAAACCCTACCGTGAGCTTTACGTCAATGACAGCTGCTAGT
catttctttttgtttt CT-rich tract
ttatttacatttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcacggaataaatatagtataaagttttcatatatatgaattaataactttattatcgaccgttgtgttatttacatttctttttgttttgctttgtagACGTGATAGTTACATCACGCATAGGGCTTTCTGCGATGCATTGATACAAGAGACTGCAAGAAACCCTACCGTGAGCTTTACGTCAATGACAGCTGCTAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - gaataaa