Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATTCACATTCACATTCCTCCTCTCTCTCATTTCATTTCATCTTCACCAAACTCTCATGGACTTCGATTCCGCAgtgagtttttatttcctctcctaaccaaatctttactctacttattaattttgatataaacaaaccctttgaattcatttgttttacaaatttggaccgtaatttttgaacattacaaaaggaaaccctattatctgttttgttttctttag

Basic information

species Arabidopsis thaliana
transcript AT2G01913.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116412720|gb|EG455312.1|EG455312
EST:     TGGACTTCGATTCCGCA                         GACAAACGAGAGAGTGTGGAGGAGACAGTGATGATGGAATACGATGAAGAA
genomic: TGGACTTCGATTCCGCAgtgagttttt ... ttttctttagGACAAACGAGAGAGTGTGGAGGAGACAGTGATGATGGAATACGATGAAGAA
EST: gi|116420287|gb|EG462879.1|EG462879
EST:     CTCTCATTTCATTTCATCTTCACCAAACTCTCATGGACTTCGATTCCGCA                         GACAAACGAGAGAGTGTGGAGGAGACAGTGATGATGGAATACGATGAAGAA
genomic: CTCTCATTTCATTTCATCTTCACCAAACTCTCATGGACTTCGATTCCGCAgtgagttttt ... ttttctttagGACAAACGAGAGAGTGTGGAGGAGACAGTGATGATGGAATACGATGAAGAA
EST: gi|116420285|gb|EG462877.1|EG462877
EST:     CTCTCATTTCATTTCATCTTCACCAAACTCTCATGGACTTCGATTCCGCA                         GACAAACGAGAGAGTGTGGAGGAGACAGTGATGATGGAATACGATGAAGAA
genomic: CTCTCATTTCATTTCATCTTCACCAAACTCTCATGGACTTCGATTCCGCAgtgagttttt ... ttttctttagGACAAACGAGAGAGTGTGGAGGAGACAGTGATGATGGAATACGATGAAGAA
EST: gi|116459563|gb|EG502155.1|EG502155
EST:     CTCTCATTTCATTTCATCTTCACCAAACTCTCATGGACTTCGATTCCGCA                         GACAAACGAGAGAGTGTGGAGGAGACAGTGATGATGGAATACGATGAAGAA
genomic: CTCTCATTTCATTTCATCTTCACCAAACTCTCATGGACTTCGATTCCGCAgtgagttttt ... ttttctttagGACAAACGAGAGAGTGTGGAGGAGACAGTGATGATGGAATACGATGAAGAA
EST: gi|116412726|gb|EG455318.1|EG455318
EST:     GGACTTCGATTCCGCA                         GACAAACGAGAGAGTGTGGAGGAGACAGTGATGATGGAATACGATGAAGAA
genomic: GGACTTCGATTCCGCAgtgagttttt ... ttttctttagGACAAACGAGAGAGTGTGGAGGAGACAGTGATGATGGAATACGATGAAGAA
EST: gi|116412732|gb|EG455324.1|EG455324
EST:     GGACTTCGATTCCGCA                         GACAAACGAGAGAGTGTGGAGGAGACAGTGATGATGGAATACGATGAAGAA
genomic: GGACTTCGATTCCGCAgtgagttttt ... ttttctttagGACAAACGAGAGAGTGTGGAGGAGACAGTGATGATGGAATACGATGAAGAA
EST: gi|116420276|gb|EG462868.1|EG462868
EST:     CTCTCATTTCATTTCATCTTCACCAAACTCTCATGGACTTCGATTCCGCA                         GACAAACGAGAGAGTGTGGAGGAGACAGTGATGATGGAATACGATGAAGAA
genomic: CTCTCATTTCATTTCATCTTCACCAAACTCTCATGGACTTCGATTCCGCAgtgagttttt ... ttttctttagGACAAACGAGAGAGTGTGGAGGAGACAGTGATGATGGAATACGATGAAGAA
EST: gi|116412724|gb|EG455316.1|EG455316
EST:     GGACTTCGATTCCGCA                         GACAAACGAGAGAGTGTGGAGGAGACAGTGATGATGGAATACGATGAAGAA
genomic: GGACTTCGATTCCGCAgtgagttttt ... ttttctttagGACAAACGAGAGAGTGTGGAGGAGACAGTGATGATGGAATACGATGAAGAA
EST: gi|116420284|gb|EG462876.1|EG462876
EST:     CTCTCATTTCATTTCATCTTCACCAAACTCTCATGGACTTCGATTCCGCA                         GACAAACGAGAGAGTGTGGAGGAGACAGTGATGATGGAATACGATGAAGAA
genomic: CTCTCATTTCATTTCATCTTCACCAAACTCTCATGGACTTCGATTCCGCAgtgagttttt ... ttttctttagGACAAACGAGAGAGTGTGGAGGAGACAGTGATGATGGAATACGATGAAGAA
EST: gi|116412733|gb|EG455325.1|EG455325
EST:     TGGACTTCGATTCCGCA                         GACAAACGAGAGAGTGTGGAGGAGACAGTGATGATGGAATACGATGAAGAA
genomic: TGGACTTCGATTCCGCAgtgagttttt ... ttttctttagGACAAACGAGAGAGTGTGGAGGAGACAGTGATGATGGAATACGATGAAGAA
EST: gi|116412721|gb|EG455313.1|EG455313
EST:     GGACTTCGATTCCGCA                         GACAAACGAGAGAGTGTGGAGGAGACAGTGATGATGGAATACGATGAAGAA
genomic: GGACTTCGATTCCGCAgtgagttttt ... ttttctttagGACAAACGAGAGAGTGTGGAGGAGACAGTGATGATGGAATACGATGAAGAA
EST: gi|116420281|gb|EG462873.1|EG462873
EST:     CTCTCATTTCATTTCATCTTCACCAAACTCTCACGGACTTCGATTCCGCA                         GACAAACGAGAGAGTGTGGAGGAGACAGTGATGATGGAATACGATGAAGAA
genomic: CTCTCATTTCATTTCATCTTCACCAAACTCTCATGGACTTCGATTCCGCAgtgagttttt ... ttttctttagGACAAACGAGAGAGTGTGGAGGAGACAGTGATGATGGAATACGATGAAGAA
EST: gi|116420288|gb|EG462880.1|EG462880
EST:     CTCTCATTTCATTTCATCTTCACCAAACTCTCATGGACTTCGATTCCGCA                         GACAAACGAGAGAGTGTGGAGGAGACAGTGATGATGGAATACGATGAAGAA
genomic: CTCTCATTTCATTTCATCTTCACCAAACTCTCATGGACTTCGATTCCGCAgtgagttttt ... ttttctttagGACAAACGAGAGAGTGTGGAGGAGACAGTGATGATGGAATACGATGAAGAA
EST: gi|116412725|gb|EG455317.1|EG455317
EST:     TGGACTTCGATTCCGCA                         GACAAACGAGAGAGTGTGGAGGAGACAGTGATGATGGAATACGATGAAGAA
genomic: TGGACTTCGATTCCGCAgtgagttttt ... ttttctttagGACAAACGAGAGAGTGTGGAGGAGACAGTGATGATGGAATACGATGAAGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACATTCACATTCACATTCCTCCTCTCTCTCATTTCATTTCATCTTCACCAAACTCTCATGGACTTCGATTCCGCAgtgagtttttatttcctctcctaaccaaatctttactctacttattaattttgatataaacaaaccctttgaattcatttgttttacaaatttggaccgtaatttttgaacattacaaaaggaaaccctattatctgttttgttttctttag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA