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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGAGGAGAGCCTTCACCGGTTAGGGATGAGTATGCTCCTGTTATATTCTCTCAAGATAGTGTCTCTTACCTTGAGTCACTCGATATGATGTCAGGCGAGgtaatataaacattatcagacacttatggttttgttttttcggttaagtatccgacctgcacctcttctgaattttggctatcttttctgcag

Basic information

species Arabidopsis thaliana
transcript AT2G01830.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G01830.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA07G27540.1 (Glycine max), 5'ss of exon 2
TAGAGGAGAGCCTTCACCGGTTAGGGATGAGTATGCTCCTGTTATATTCTCTCAAGATAGTGTCTCTTACCTTGAGTCACTCGATATGATGTCAGGCGAGgtaatata-aacattatcagacacttatggttttgttttttcggttaagtatccgacctgcacctcttctgaattttggctatcttttctgcag
   | || || |||||| |||||| ||||||||||| || || |||||| | ||||| | |||||| || |||||||| || ||||||||||| || ||||||   || |||| |  |  ||| |  |   |||  |  ||   |  | | |   |  | |||    ||  ||||||| || |   |  | |||
GGAAAGAAAGTCTTCACTGGTTAGAGATGAGTATGCACCGGTGATATTCGCGCAAGAAACTGTCTCATATCTTGAGTCTCTTGATATGATGTCTGGGGAGgtagattacaacactgccgaacattattctatttactgcttatat--attgttaaattttcac----tcaaaattttgcctttgcatgtt-cag

upper sequence: AT2G01830.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA05G34310.1 (Glycine max), 5'ss of exon 2
TAGAGGAGAGCCTTCACCGGTTAGGGATGAGTATGCTCCTGTTATATTCTCTCAAGATAGTGTCTCTTACCTTGAGTCACTCGATATGATGTCAGGCGAGgtaatataaacattatcagacacttatggttttgttttttcggttaagtatccgacctgcacctctt--ctg-aattttggctatcttttctgcag
   | |||||||||||| |||||| ||||||||||| || || |||||  | ||||| |   |||||||||| || || || ||||||||||| || |||||||       ||| ||| || ||       |||||| | |   |   |||| | ||   || | ||  ||| |||||    | |   |  |||||
GGAAAGAGAGCCTTCACTGGTTAGAGATGAGTATGCACCGGTGATATTTGCGCAAGAAACACTCTCTTACCTCGAATCTCTTGATATGATGTCCGGGGAGgtaa-------att-tcaaaccctgtcaacattgtttctgcttctgt-tatcagtccataactttttaactgtaatttctcatttgcatgatgcag

upper sequence: AT2G01830.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv01s0011g06190.t01 (Vitis vinifera), 5'ss of exon 2
TAGAGGAGAGCCTTCACCGGTTAGGGATGAGTATGCTCCTGTTATATTCTCTCAAGATAGTGTCTCTTACCTTGAGTCACTCGATATGATGTCAGGCGAGgtaatataaacattatcagacacttatggttttgttttttcggttaagtatccgacctgcacctcttctgaattttggc-tatcttttctgcag
 |   ||||| |||| ||| || | || |||||||| ||||| ||||| ||||| || | ||| || ||| |||| ||||| ||||||||||| |||||||| |                 |||  ||||| |||  | |   | || | |  |   |     |  |  | || ||  | |||  ||  |||||
GAAGAGAGAGGCTTCGCCGATTCGAGACGAGTATGCACCTGTGATATTTTCTCAGGAAACTGTTTCCTACATTGAATCACTTGATATGATGTCTGGCGAGgtga-----------------actcttggttctgtgatat---tcaattgtttggaattttatttattgggatgttaacatatggttgatgcag