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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactacatcttcaaacaaattccagtactgttgcctttcatctttggtttctcaaactgcctcaaagattctgttttaaaaattttctgcagGAATGCTTGCTATGCTCCTAGATACAGAACTAAGCTCGACACAGAGAGATTACGCTCAAACCGCTCAAGTATGTGGTAAAGCTTTGATTGCATTGATAAA

Basic information

species Arabidopsis thaliana
transcript AT2G01830.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G01830.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA07G27540.1 (Glycine max), 3'ss of exon 6
-------------------gtactacatcttcaaacaaattccagtactgttgcctttcatctttggtttctcaaactgcctcaaagattctgttttaaaaattttctgcagGAATGCTTGCTATGCTCCTAGATACAGAACTAAGCTCGACACAGAGAGATTACGCTCAAACCGCTCAAGTATGTGGTAAAGCTTTGATTGCATTGATAAA
                      |||  |  | ||  ||| |    || | |    |   | |||| | || || |  ||        ||  | |     ||| || ||| ||||||||||||| |||| |||||||||||| | || || || ||  ||||||| ||||| || ||||||| |||||| || ||  | ||  |||| |||||
gtaacttcaagaatctgtttctctatcttattaacaaaagtgtgata-tatgctttcataacttttgcttttcta-ttgatgttggtatcatttaacttaaaattactgtagGAATGCTTGCTCTGCTTCTAGATACAGAATTGAGTTCAACCCAACGAGATTATGCTCAGACTGCTCAAGCATGTGGAAAGGCACTCATAACATTAATAAA

upper sequence: AT2G01830.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv01s0011g06190.t01 (Vitis vinifera), 3'ss of exon 6
----gtactacatcttcaa--acaaattccagtactgttgcctttcatctttggtttctcaaactgcctcaaagattctgttttaaaaattttc--------tgcagGAATGCTTGCTATGCTCCTAGATACAGAACTAAGCTCGACACAGAGAGATTACGCTCAAACCGCTCAAGTATGTGGTAAAGCTTTGATTGCATTGATAAA
    |  | ||||| ||    |||| ||    |       |   | |  ||| |   || |||       ||   |  |||  |     |||||        || ||||||||||||| ||||||||||||| ||  | || || || ||||||||||| |||||||| |||||||  ||||| || ||  | ||  |||| |||||
gtatggtcaacatcctcttttacaatttttcttttaaaaacaagtaaaatttaggcacttaaatctgtctaacagtaatgtcatccctgttttcgctataattgtagGAATGCTTGCTCTGCTCCTAGATACCGATTTGAGTTCAACCCAGAGAGATTATGCTCAAACTGCTCAAGCCTGTGGAAAGGCACTAATAACATTAATAAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatctttggtttctcaaactgcctcaaagattctgttttaaaaattttctgcagGAATGCTTGCTATGCTCCTAGATACAGAACTAAGCTCGACACAGAGAGATTACGCTCAAACCGCTCAAGTATGTGGTAAAGCTTTGATTGCATTGATAAA
                                             ttttctgc  CT-rich tract
                          aaagattctgttttaa  TA-rich tract