Sequence
atgc intronic sequence ATGC exonic sequence...gttttcttcaaatcctctgttttatttcctctgctttgggttttcttcaaatcctctgttttgttttgtctaatacaaaaccaaaaatgaaatctttcagACATTGAAGACACGTGTGGTGAAAAAAAATTGTAACCCAGTATGGAATGAAGAAATGACTGTTGCTATCAAAGATCCTAATGTCCCAATCCGCTTG
Basic information
species | Arabidopsis thaliana |
transcript | AT2G01540.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcaaatcctctgttttgttttgtctaatacaaaaccaaaaatgaaatctttcagACATTGAAGACACGTGTGGTGAAAAAAAATTGTAACCCAGTATGGAATGAAGAAATGACTGTTGCTATCAAAGATCCTAATGTCCCAATCCGCTTG
gtctaat putative branch site (score: 3)
tctttc putative PPT
aaaaatgaaatcttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttttcttcaaatcctctgttttatttcctctgctttgggttttcttcaaatcctctgttttgttttgtctaatacaaaaccaaaaatgaaatctttcagACATTGAAGACACGTGTGGTGAAAAAAAATTGTAACCCAGTATGGAATGAAGAAATGACTGTTGCTATCAAAGATCCTAATGTCCCAATCCGCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - -cttcaaa
- - - -tcaaatc
- - - - - - - - - - - - - - - - gctttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaaat